Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J07
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    31   0.051
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   2.6  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   3.4  
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    25   5.9  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   5.9  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   5.9  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    25   5.9  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    24   7.8  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 31.5 bits (68), Expect = 0.051
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 18  KILVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQI 146
           K +VV + +   A +CSKY PSIP      +TR  Q   QS +
Sbjct: 404 KAIVVLSTSGNTARLCSKYRPSIP---IVMVTRCPQRARQSHL 443


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 23/74 (31%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
 Frame = +3

Query: 39  PANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQI---------AAKLGVPVRDVKRVI 191
           P N+N    S    SIP    T       N AQS +         A KLG      K  +
Sbjct: 240 PPNSNNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLTARKLGFASSQTKSAV 299

Query: 192 IWGNHSSTQFPDAS 233
              NHS     DAS
Sbjct: 300 S-NNHSRNSSKDAS 312


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 144 IAAKLGVPVRDVKRVIIWGNHSSTQFPDASNAVATIGGV*KISTG 278
           +A + G+P  +V+ V  + NH  +  P  S   ++IG    +  G
Sbjct: 639 LARRRGLPRLEVRGVAAFTNHLESSHPPISTVDSSIGSASVVEKG 683


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 88  GIEGAYFEQIKALVLAGFPTT 26
           GI GAY E +  ++++G P T
Sbjct: 94  GIGGAYAEDLPVILISGSPNT 114


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 15  CKILVVGNPANTNA 56
           CK L  GNP NTNA
Sbjct: 71  CKRLSTGNPNNTNA 84


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 88  GIEGAYFEQIKALVLAGFPTTRIL 17
           GI GAY E +  ++++G P T  L
Sbjct: 89  GIGGAYAENLPVILVSGSPNTNDL 112


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 88  GIEGAYFEQIKALVLAGFPTTRI 20
           G+ G+Y E +  + + G P+T++
Sbjct: 87  GVAGSYAEHVPVVHIVGMPSTKV 109


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 168 VRDVKRVIIWGNHSSTQFPDASNAVAT 248
           + +V  +II GN + T  P  +NAV++
Sbjct: 228 LEEVMEIIIRGNSNRTMSPTEANAVSS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,564
Number of Sequences: 5004
Number of extensions: 26054
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)