Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J07
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 114 2e-26
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 112 9e-26
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 101 2e-22
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 32 0.20
01_01_0205 + 1764034-1767601,1767934-1767944 28 2.4
12_01_0605 - 4983235-4983849,4985658-4986578 27 4.3
01_01_1205 - 9693702-9694517,9694591-9695076,9697014-9697095,969... 27 5.6
10_01_0256 - 2688172-2688786,2690779-2690857,2691567-2691652,269... 27 7.5
03_06_0132 + 31905044-31905084,31905187-31905268,31905341-31905592 27 7.5
06_01_0188 - 1464961-1466814 26 9.9
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 114 bits (275), Expect = 2e-26
Identities = 51/78 (65%), Positives = 61/78 (78%)
Frame = +3
Query: 15 CKILVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKRVII 194
CK+LVV NPANTNAL+ ++AP+IP +N T +TRLD NRA Q+A KL V V DVK II
Sbjct: 161 CKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNAII 220
Query: 195 WGNHSSTQFPDASNAVAT 248
WGNHSSTQFPDAS+A +
Sbjct: 221 WGNHSSTQFPDASHATVS 238
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +1
Query: 262 EKSVPEAINDEDYLKNSFVTTVQKRGAAVIXXXXXXXXXXXXXXXXDH 405
E+ V E I DE +L+ FVT VQ+RGAAVI DH
Sbjct: 243 ERPVRELIADEIWLREEFVTDVQQRGAAVIKARKQSSSLSAASAACDH 290
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 112 bits (270), Expect = 9e-26
Identities = 50/75 (66%), Positives = 60/75 (80%)
Frame = +3
Query: 15 CKILVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKRVII 194
CK+LVV NPANTNALI ++APSIP++N T +TRLD NRA QI+ KL V V DVK II
Sbjct: 125 CKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVKNAII 184
Query: 195 WGNHSSTQFPDASNA 239
WGNHSSTQ+PD ++A
Sbjct: 185 WGNHSSTQYPDVNHA 199
Score = 40.3 bits (90), Expect = 6e-04
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 262 EKSVPEAINDEDYLKNSFVTTVQKRGAAVIXXXXXXXXXXXXXXXXDH 405
EK V E + D+++L F++TVQ+RGAA+I DH
Sbjct: 207 EKPVRELVADDEWLNTEFISTVQQRGAAIIKARKQSSALSAASSACDH 254
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 101 bits (242), Expect = 2e-22
Identities = 47/78 (60%), Positives = 57/78 (73%)
Frame = +3
Query: 6 SARCKILVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKR 185
S K++VVGNP NTNALIC K AP+IP +NF A+TRLD+NRA+ Q+A K GV V
Sbjct: 190 SRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN 249
Query: 186 VIIWGNHSSTQFPDASNA 239
+ IWGNHS+TQ PD NA
Sbjct: 250 MTIWGNHSTTQVPDFLNA 267
Score = 30.3 bits (65), Expect = 0.61
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 265 KSVPEAINDEDYLKNSFVTTVQKRGAAVI 351
+ V E I D +L++ F TVQKRG +I
Sbjct: 272 RPVKEVIKDTKWLEDEFTKTVQKRGGVLI 300
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 31.9 bits (69), Expect = 0.20
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 27 VVGNPANTNALICS---KYAPSIPKENFTAMTRLDQNRAQSQIAAKLGVPVRDVKRVIIW 197
++ NP N+ I + K A + + +T LD RA + +A LG+ +DV ++
Sbjct: 157 LISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVARANTFVAEVLGIDPKDVNVPVVG 216
Query: 198 GNHSSTQFP 224
G+ T P
Sbjct: 217 GHAGVTILP 225
>01_01_0205 + 1764034-1767601,1767934-1767944
Length = 1192
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 238 ALDASGNWVEE*LPQMITLLTSLT 167
+LD S NW+ +PQ +T LT LT
Sbjct: 1088 SLDLSSNWISGEIPQELTNLTFLT 1111
>12_01_0605 - 4983235-4983849,4985658-4986578
Length = 511
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 208 PQPNFLMHLMLSRLLVEFEKSVPEAINDEDYLKNSFVTTVQKRG 339
P N ++HLML L+ +F+ ++PE + KN V +K G
Sbjct: 456 PVANRMLHLMLGSLVHQFQWTLPEVVK-----KNGGVDMAEKFG 494
>01_01_1205 -
9693702-9694517,9694591-9695076,9697014-9697095,
9697876-9698051,9698326-9698580
Length = 604
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 3 NSARCKILVVGNPANTNALICSKYAPSIP 89
NSA+ +++V T A + +KY PS+P
Sbjct: 484 NSAKAALILVLTRGGTTARLVAKYRPSMP 512
>10_01_0256 -
2688172-2688786,2690779-2690857,2691567-2691652,
2693046-2693113,2695175-2695244,2696191-2696320,
2696924-2697906
Length = 676
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 208 PQPNFLMHLMLSRLLVEFEKSVPEAINDEDYLKNSFVTTVQKRG 339
P N ++H+ML+ L+ +F+ ++PE + KN V +K G
Sbjct: 621 PVANRMLHVMLASLVHQFQWTLPEVVK-----KNGGVDMAEKFG 659
>03_06_0132 + 31905044-31905084,31905187-31905268,31905341-31905592
Length = 124
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 393 CFSCRKGGRHFSSCNNSSTTFLNCC 319
C S R GG+ F C + NCC
Sbjct: 22 CRSMRHGGKVFFKCEENEQDVPNCC 46
>06_01_0188 - 1464961-1466814
Length = 617
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 199 AITPQPNFLMHLMLSRLLVEFE 264
AITP P FL + RLL EFE
Sbjct: 306 AITPIPRFLHFTLNERLLREFE 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,243,715
Number of Sequences: 37544
Number of extensions: 163580
Number of successful extensions: 423
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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