Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J06
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    27   1.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   3.4  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   7.9  

>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 100 QRYLVKNIRKKNITSLSLTFNKFMKKSNLLLNVEVIW 210
           Q  L+ NIR+      +L  N F K  + L NV V W
Sbjct: 392 QLVLLNNIREDGSVISALAQNSFHKVESALANVSVAW 428


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 20/73 (27%), Positives = 29/73 (39%)
 Frame = +1

Query: 61   Y*RWSQYRLLMY*QRYLVKNIRKKNITSLSLTFNKFMKKSNLLLNVEVIWE*QLMTIRVP 240
            Y RW QY      +R     + +  IT   L   KF+   +L  NV +  E    + R P
Sbjct: 886  YDRWCQYIFYRGVKRIGYARLHRSTITDTELQTGKFLVTKDLGRNVRIDKEHVPESHRYP 945

Query: 241  PSNPG*GLSALSY 279
                G G++   Y
Sbjct: 946  SLFEGTGVNGHYY 958


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 200 STLSNKFDFFINLLNVRDNEVIFFLRIFLTRYLC*YINNLYCDHL 66
           +T  +KF   I+ L   DN +   +   L  Y C  I +L  DH+
Sbjct: 422 ATFEDKFVGAISSLVAEDNSLYVTVLCVLAPYRCLGIGSLLIDHV 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,378
Number of Sequences: 5004
Number of extensions: 38423
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)