Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J06
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148...    29   2.0  
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978...    28   4.5  
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422...    27   7.9  

>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
            31615047-31616835,31617136-31617163,31617343-31617794
          Length = 1715

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 302  HAIKRINSTPLSNCPNICLLNVINYLFILQILNLLHS-KLS 421
            H+  ++    + NC N+C L  + +L  L+I+ L  + KLS
Sbjct: 1358 HSCTKLEELEIFNCKNLCTLGGLTFLSSLKIMKLARNPKLS 1398


>12_01_0971 -
           9781887-9781924,9782036-9782247,9782327-9784114,
           9784630-9785432
          Length = 946

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 262 LSALSYKIISYNVSCNKTYQLNTFIQLPKYMFIK 363
           LS L+Y +I YN   N    +N    +PK +++K
Sbjct: 770 LSNLAYLVIFYNTRSNDQKDINLLGCIPKLLYLK 803


>07_03_0203 +
           15138864-15140452,15140629-15140726,15141924-15142235,
           15142437-15142749,15144025-15146023,15147033-15147068
          Length = 1448

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 182 FDFFINLLNVRDNEVIFFLRIFLTRYLC 99
           F + +  LN +D+E +FF RIF ++  C
Sbjct: 821 FIYKMQCLNAKDSETLFFSRIFGSKDQC 848


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,619,744
Number of Sequences: 37544
Number of extensions: 194224
Number of successful extensions: 342
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)