Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J06
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82069-4|CAB04905.1|  290|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z81132-1|CAB03430.1|  361|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical...    27   9.4  

>Z82069-4|CAB04905.1|  290|Caenorhabditis elegans Hypothetical
           protein W04A8.5 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 302 HAIKRINSTPLSNCPNICLLNVINYLFILQILNLLHS 412
           HA+K     PL N P I L  VI+YL    I  LLH+
Sbjct: 2   HAVKPF---PLCNLPLISLREVIDYLPTFDIFVLLHT 35


>Z81132-1|CAB03430.1|  361|Caenorhabditis elegans Hypothetical
           protein T26E4.1 protein.
          Length = 361

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 236 TRIVISCHSQITSTLSNKFDFFINLLNVRDNEVIFF 129
           T+I+ S +++I ++ S   D   N+LN+ D   IFF
Sbjct: 309 TKILFSNNNEIRTSDSTYCDRLKNMLNITDPRQIFF 344


>U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical protein
            ZK328.7a protein.
          Length = 1332

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 7/32 (21%), Positives = 20/32 (62%)
 Frame = +1

Query: 283  IISYNVSCNKTYQLNTFIQLPKYMFIKCYKLF 378
            +  YN +C K ++L  +++  +  +++ YK++
Sbjct: 1239 VFKYNCNCLKAFELYGYMREKEQKYVEAYKMY 1270


>AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical
           protein Y39A1A.16 protein.
          Length = 374

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 296 TYHAIK-RINSTPLSNCPNICLLNVINYLFILQILNLLHSKLSRVSRE 436
           T+  +K + NS  + N P + L NVIN L I  +     SKLS+ S++
Sbjct: 9   TFFRVKFKKNSFKILNLPLVALTNVINQLDIQSV-----SKLSKTSKK 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,077,898
Number of Sequences: 27780
Number of extensions: 201292
Number of successful extensions: 360
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)