Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J06
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.42 
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   5.2  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   6.9  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   6.9  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   6.9  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   6.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 307 CMIRYNL*SCMKGQITLTRDWKGELESSSAVIPR*LLH*VTNLIFS 170
           C+I +N     K  I L   WK  LES +  +    +H   +L+++
Sbjct: 429 CLISWNPLMQPKQPIKLFEQWKSILESGTTTLQTRTMHPYDHLVWN 474


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 252 GIGRGNSNRHQLSFPDN 202
           G+G+G + RH+    DN
Sbjct: 10  GLGKGGAKRHRKVLGDN 26


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 262 LSALS--YKIISYNVSCNKTYQLNTFIQLPKY 351
           +S+LS  YK  +YN   N  Y  N + +L  Y
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYY 113


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 262 LSALS--YKIISYNVSCNKTYQLNTFIQLPKY 351
           +S+LS  YK  +YN   N  Y  N + +L  Y
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYY 113


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 262 LSALS--YKIISYNVSCNKTYQLNTFIQLPKY 351
           +S+LS  YK  +YN   N  Y  N + +L  Y
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYY 113


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 262 LSALS--YKIISYNVSCNKTYQLNTFIQLPKY 351
           +S+LS  YK  +YN   N  Y  N + +L  Y
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYY 113


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 386 LQILNLLHSKLSRVSR 433
           LQILNL  +K+  V R
Sbjct: 504 LQILNLARNKVQHVER 519


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 262 LSALSYKIISYNVSCNKTYQL 324
           +  L+ KI+ YN+     YQ+
Sbjct: 381 IDTLARKILGYNLEAASKYQI 401


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 262 LSALSYKIISYNVSCNKTYQL 324
           +  L+ KI+ YN+     YQ+
Sbjct: 381 IDTLARKILGYNLEAASKYQI 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,549
Number of Sequences: 438
Number of extensions: 2997
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)