Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J05
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   171   6e-44
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   170   1e-43
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    29   0.36 
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    29   0.62 
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   1.9  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   2.5  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   3.3  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   5.8  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   5.8  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   7.7  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   7.7  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   7.7  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  171 bits (416), Expect = 6e-44
 Identities = 86/153 (56%), Positives = 108/153 (70%)
 Frame = +3

Query: 105 ANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRT 284
           +NT++GP+RIH VR RGGN K+RALRLD+GNF+WGSE  ++KTRII V Y+ SNNELVRT
Sbjct: 34  SNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRT 93

Query: 285 KTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQ 464
            TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+   +K+ +R 
Sbjct: 94  NTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSARL 147

Query: 465 RLSKVEGGLEEQFHTGRLLACVASRPGQCGRAD 563
             SKV+  LE QF  GRL A V+SRPGQ GR D
Sbjct: 148 GDSKVDSALETQFAAGRLYAVVSSRPGQSGRCD 180



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +1

Query: 1  MGISRDHWHKKRATGGKRAPIRKKRK 78
          MGI+RD  HK+ ATG KRA  RKKRK
Sbjct: 1  MGITRDSRHKRSATGAKRAQYRKKRK 26


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  170 bits (414), Expect = 1e-43
 Identities = 86/153 (56%), Positives = 108/153 (70%)
 Frame = +3

Query: 105 ANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRT 284
           +NT++GP+RIH VR RGGN K+RALRLD+GNF+WGSE  ++KTRII V Y+ SNNELVRT
Sbjct: 34  SNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRT 93

Query: 285 KTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQ 464
            TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+   +K+ +R 
Sbjct: 94  NTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSARL 147

Query: 465 RLSKVEGGLEEQFHTGRLLACVASRPGQCGRAD 563
             SKV+  LE QF  GRL A V+SRPGQ GR D
Sbjct: 148 GDSKVDSALETQFAAGRLYAVVSSRPGQSGRCD 180



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +1

Query: 1  MGISRDHWHKKRATGGKRAPIRKKRK 78
          MGI+RD  HK+ ATG KRA  RKKRK
Sbjct: 1  MGITRDSRHKRSATGAKRAQYRKKRK 26


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 363 PLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGL 491
           PL R+K  +LT  E  +  +  S  T+KK+  + + SK   G+
Sbjct: 569 PLSRRKARQLTALELGVSPEALSSATSKKHNKKNKRSKQRSGV 611


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 309 VVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSRQRLSK 476
           V  DA   ++  E   ++   +KK +KL EA+     K++ +K  KK+   +R S+
Sbjct: 434 VTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSE 489


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 105  ANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRI 239
            +N  +  Q+  L+ S    T YRA+ LDTG+     E +  K RI
Sbjct: 1114 SNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 311 DNSILYQGFGTHQFIVRGIINNI 243
           +NS+ +Q F +H FI R +IN I
Sbjct: 541 ENSLYHQSFSSHWFISRLLINPI 563


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
 Frame = +1

Query: 10  SRDHWHKKRATGGKRAPIRKKRKVLSLCS-----PGLPTLSLVPNAST*SDPVVVTLNIV 174
           +R  W +KR    K  P R   ++ S  S     P +P+ S  P+ S+         N +
Sbjct: 86  TRKRWRQKRLWSFKNFPFRPPTRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDI 145

Query: 175 PCVL 186
           P VL
Sbjct: 146 PSVL 149


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 347 FIPLPERCGIHHDNSILYQ 291
           F+P PE C I+H+  I  Q
Sbjct: 477 FLPAPEECNIYHNEHIQVQ 495


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 404  LSLSELGTFLPSEW 363
            LSL+E GTFL  EW
Sbjct: 1554 LSLNECGTFLQKEW 1567


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 204 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRK 377
           WGS+     +K  + +V+  +++ +  +T  L         AT F  + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309

Query: 378 K 380
           +
Sbjct: 310 Q 310


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 354 YLLPLGRKKGAKLTE 398
           Y+LPLGRK   K TE
Sbjct: 492 YILPLGRKTARKCTE 506


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -2

Query: 202 AKFPVSRRRA-RYLVLPPRDLTKW--MRWGPSLVLAARANINS 83
           AK P+ +RR  + L+L  RDLT W  +R   SL+   R +I S
Sbjct: 420 AKKPILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGDIFS 462


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 24/80 (30%), Positives = 38/80 (47%)
 Frame = +3

Query: 108 NTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTK 287
           NT + PQ     RSR   T  R+L   +G  +  S  ++ +TR    V +AS+N L+   
Sbjct: 533 NTVISPQPTR--RSR---TPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLISII 584

Query: 288 TLVKNAIVVVDATPFRQWYE 347
           +   ++  V   TPF   +E
Sbjct: 585 SSKPSSSTVQRQTPFHSPFE 604


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,077
Number of Sequences: 5004
Number of extensions: 53777
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)