Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J05
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 188 2e-48
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 173 6e-44
05_04_0119 - 18169729-18169887,18170515-18170653,18170728-181709... 31 0.84
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508... 29 1.9
04_03_0182 - 12349072-12349149,12349459-12349656,12349746-123497... 29 1.9
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 29 2.6
06_03_1165 - 28106604-28106915 29 3.4
05_07_0165 + 28107093-28108457 28 5.9
01_02_0122 + 11348686-11348948,11350492-11350587,11351513-113515... 28 5.9
09_03_0103 - 12383585-12384700 27 7.8
01_01_1134 + 8994315-8995892 27 7.8
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 188 bits (459), Expect = 2e-48
Identities = 95/162 (58%), Positives = 117/162 (72%), Gaps = 9/162 (5%)
Frame = +3
Query: 105 ANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVR 281
ANTKL + + VR RGGN K+RALRLDTGN++WGSE TRKTRI+DVVYNASNNELVR
Sbjct: 34 ANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVR 93
Query: 282 TKTLVKNAIVVVDATPFRQWYESHYLLPLGRKK--------GAKLTEAEEAIINKKRSQK 437
T+TLVK+AIV VDA PF+QWY +HY + +GRKK A+ E E A K+S
Sbjct: 94 TQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNH 153
Query: 438 TAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRAD 563
+K RQ+ ++ +EEQF +GRLLAC++SRPGQCGRAD
Sbjct: 154 VVRKLEKRQQTRTLDSHIEEQFGSGRLLACISSRPGQCGRAD 195
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = +1
Query: 1 MGISRDHWHKKRATGGKRAPIRKKRK 78
MGISRD HK+RATGGK+ RKKRK
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRK 26
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 173 bits (422), Expect = 6e-44
Identities = 95/179 (53%), Positives = 117/179 (65%), Gaps = 26/179 (14%)
Frame = +3
Query: 105 ANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVR 281
ANTKL + + VR RGGN K+RALRLDTGN++WGSE TRKTRI+DVVYNASNNELVR
Sbjct: 34 ANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVR 93
Query: 282 TKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGA------------------------- 386
T+TLVK+AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 94 TQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLYVML 153
Query: 387 KLTEAEEAIINKKRSQKTAKKYLSRQRLSKVEGGLEEQFHTGRLLACVASRPGQCGRAD 563
K +AE K+S +K RQ+ ++ +EEQF +GRLLAC++SRPGQCGRAD
Sbjct: 154 KGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRAD 212
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = +1
Query: 1 MGISRDHWHKKRATGGKRAPIRKKRK 78
MGISRD HK+RATGGK+ RKKRK
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRK 26
>05_04_0119 -
18169729-18169887,18170515-18170653,18170728-18170974,
18171585-18171968,18172251-18172540,18172884-18173295,
18173409-18173420,18173943-18174135
Length = 611
Score = 30.7 bits (66), Expect = 0.84
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = -2
Query: 226 RVEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRWGPSLVLAARANIN----SKLSSSYEW 59
R H D + P +R LV PP D +RW S R+N+N +++ W
Sbjct: 120 RSRHEDLESICPPQEKRLFCLVPPPNDYKIPIRWPTSRDYVWRSNVNHSRLAEVKGGQNW 179
Query: 58 AH 53
H
Sbjct: 180 VH 181
>05_01_0573 -
5083030-5083151,5084639-5084738,5084790-5084829,
5085122-5085567
Length = 235
Score = 29.5 bits (63), Expect = 1.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 476 GRGWSGGAIPHWTAVS 523
G GW GG+ HW++VS
Sbjct: 65 GNGWQGGSTDHWSSVS 80
>04_03_0182 -
12349072-12349149,12349459-12349656,12349746-12349750,
12349928-12350041,12350129-12350240,12350363-12350377
Length = 173
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 229 LRVEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRWGPSLV 110
LRV H H + +R R + + P ++ K RWG ++
Sbjct: 16 LRVMHFSGHGDWTTNRDRPTFTLYPLQECYKLWRWGTQMI 55
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +3
Query: 132 IHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 311
+H + + GG T R +R C +++ ++V++ + NELV T +N I+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435
Query: 312 V 314
V
Sbjct: 436 V 436
>06_03_1165 - 28106604-28106915
Length = 103
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 440 SEEVPEQAAPVQGRGWSGGAIPHWTAVSMCGESARSVRS 556
+++V +A PV +GGA + + CG +ARS RS
Sbjct: 48 AKQVTGRAVPVSLSSQTGGAAASSSPAAACGRAARSKRS 86
>05_07_0165 + 28107093-28108457
Length = 454
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 507 CGIAPPDHPLPWTGAACS 454
C +PPD+ LPW AA S
Sbjct: 248 CTYSPPDYGLPWADAAVS 265
>01_02_0122 +
11348686-11348948,11350492-11350587,11351513-11351524,
11354009-11354699
Length = 353
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 416 KQKTQSKDSEEVPEQAAPVQGRGWSGGAIPHWTAVS 523
K +T+ KD PE A G G GG I + +A S
Sbjct: 192 KTRTKEKDKAPAPEAAHNDDGGGGGGGGIDNVSAAS 227
>09_03_0103 - 12383585-12384700
Length = 371
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -1
Query: 416 YDGFLSLSELGTFLPSEWQQVVAFIPLPERCGIHHDNSILYQGFGTHQFIVRGIINNIN 240
+D F E+ T W+Q+ +F P G+H + ++ Y ++I IN +N
Sbjct: 173 FDSFNVCCEIFTIGDKSWRQIGSFHGAPTDRGVHVNGAVYY--LTKFRYIASSRINCLN 229
>01_01_1134 + 8994315-8995892
Length = 525
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 192 GNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 335
G F+ C+ RK +DV + RT +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,153,812
Number of Sequences: 37544
Number of extensions: 421396
Number of successful extensions: 1257
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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