Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J05
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   277   6e-77
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.40 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   6.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.5  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   6.5  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   8.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.6  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  277 bits (679), Expect = 6e-77
 Identities = 126/154 (81%), Positives = 140/154 (90%)
 Frame = +3

Query: 102 AANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVR 281
           AANTKLGPQRIH VR+RGGN KYRALRLDTGNF+WGSEC+TRKTRIIDVVYNASNNELVR
Sbjct: 33  AANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVR 92

Query: 282 TKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKLTEAEEAIINKKRSQKTAKKYLSR 461
           TKTLVKNAIV +DATPFRQWYE HY+LPLGRK+GAKLTEAEE ++NKKRS+K   KY +R
Sbjct: 93  TKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKAR 152

Query: 462 QRLSKVEGGLEEQFHTGRLLACVASRPGQCGRAD 563
           QR +KVE  LEEQF TGR+LAC++SRPGQCGR D
Sbjct: 153 QRFAKVEPALEEQFATGRVLACISSRPGQCGRED 186



 Score = 58.4 bits (135), Expect = 5e-11
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +1

Query: 1  MGISRDHWHKKRATGGKRAPIRKKRK 78
          MGISRDHWHK+RATGGKR PIRKKRK
Sbjct: 1  MGISRDHWHKRRATGGKRKPIRKKRK 26


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 528 HMLTAVQCGIAPPDHPLPWTGAACSGTS 445
           H    V   + PP+ P+P   +AC G++
Sbjct: 169 HQFQTVVASMDPPEPPVPTVTSACVGSA 196


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 257 IINNINNTSLAG 222
           +INN NNTS+ G
Sbjct: 488 VINNRNNTSMKG 499


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 235 VLLMLFIMPLTMNWCVPKPW*RMLLSWWMPHL 330
           VL + F  P T N     PW R +   WMP L
Sbjct: 333 VLNVHFRSPSTHNM---SPWVRQVFLNWMPRL 361


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 237 YESCGLNIQIPMRSFQYQD 181
           YE CGL  + PM SFQ  D
Sbjct: 653 YE-CGLRFEDPMISFQPGD 670


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 111 CWQPGRT*TQNFPLLTNGRTFAARSP 34
           CWQ  RT    F  LT       RSP
Sbjct: 874 CWQKERTHRPTFANLTQTLDKLIRSP 899


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +1

Query: 235 VLLMLFIMPLTMNWCVPKPW 294
           +L+   +MPL + W +   W
Sbjct: 85  LLVTFLMMPLEIGWAITVSW 104


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 375 KKGAKLTEAEEAIINKKRSQKTAKKY 452
           KKG+ +T+    +I  + ++K  K+Y
Sbjct: 517 KKGSFVTQYVGEVITNEEAEKRGKEY 542


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 561 RRDRTDRADSPHMLTAVQCGIAPPDH 484
           +R + +   +  M+ A+ C I P DH
Sbjct: 9   KRRKKNLNQNQMMIWALDCSIKPKDH 34


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 532 ATHANSRPVWNCSSRPPSTLDRR 464
           A   N+RPV+    RPP    RR
Sbjct: 95  AEPGNNRPVYISQPRPPHPRLRR 117



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 532 ATHANSRPVWNCSSRPPSTLDRR 464
           A   N+RPV+    RPP    RR
Sbjct: 151 AEPGNNRPVYISQPRPPHPRLRR 173


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 225 RKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 338
           RK  + +VVY    N + +    V + I ++ A+P ++
Sbjct: 358 RKRPMHNVVYRPGENPVTQRLPAVLSRIGIILASPLKR 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,852
Number of Sequences: 438
Number of extensions: 4223
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)