Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J04
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    29   0.62 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.5  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   4.4  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    26   4.4  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   7.7  

>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 517 SPSSASGTFLGAITVSTPSEDSRDSTVSGVQP 422
           +PS ASGT  G I V    EDS D+++  ++P
Sbjct: 300 TPSFASGTENGVINVWRLDEDSNDNSMGIIKP 331


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 189  RFLPSGR*MHSANLQE*WPIRNADLEDDEDARSRNQKGTVAATFLNF 49
            + +P    +H+A  Q  WP+RN+  E +E     N   +V + ++ F
Sbjct: 1295 KIIPVALSLHNAEFQGLWPLRNSS-EKEEVCSVFNISKSVCSKYVQF 1340


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 39  FID*NLKMSLLPFLFDYEIERPRRLLDQHFGLAITPEDLL 158
           F D  LK  LL  +F+   ERP  + ++   +A++  D+L
Sbjct: 46  FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDIL 85


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 508 SASGTFLGAITVSTPSEDSRDSTVS 434
           S+SGTFL  + +S PS+ S+   +S
Sbjct: 105 SSSGTFLNHVRLSPPSKTSKPYPIS 129


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 153 LLNASIGPMVKNEYYRPWRHLAATARDVGSCIKADKDKFQVNLDVQ 290
           LL  S+  ++K +YY   R L+ T  D    + +DKDK++V   +Q
Sbjct: 864 LLLVSMNHLIK-KYYLEAR-LSLTVHDEVRYLSSDKDKYRVAFALQ 907


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,994
Number of Sequences: 5004
Number of extensions: 37549
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)