Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_J04
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 46 2e-05
03_02_0484 + 8805053-8805538 46 3e-05
03_02_0483 - 8804021-8804485 46 3e-05
03_02_0478 + 8775892-8776377 44 8e-05
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 38 0.006
01_01_0229 - 1943473-1943922 38 0.007
01_01_0231 + 1951047-1951499 37 0.010
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 35 0.039
01_01_0227 + 1933247-1933699 35 0.039
02_02_0077 - 6586638-6587165 33 0.16
06_01_1017 - 7951985-7952425 32 0.36
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422... 31 0.63
10_07_0141 + 13347648-13348331 29 2.6
11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115... 28 5.9
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 28 5.9
11_02_0016 - 7380933-7382027 28 5.9
>03_02_0485 - 8808139-8808618
Length = 159
Score = 46.0 bits (104), Expect = 2e-05
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Frame = +3
Query: 282 DVQHFTPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 437
DV EE+ V+ DG I+ + G+ EEK D+ + R +F RR+ LPE PE
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 438 TVESRLSSDGVLTVIAPRKVPE 503
+++ + +GVLTV P++ P+
Sbjct: 128 QIKASM-ENGVLTVTVPKEEPK 148
>03_02_0484 + 8805053-8805538
Length = 161
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Frame = +3
Query: 282 DVQHFTPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 437
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE PE
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 438 TVESRLSSDGVLTVIAPRKVPE 503
+++ + +GVLTV P++ P+
Sbjct: 130 QIKASM-ENGVLTVTVPKEEPK 150
>03_02_0483 - 8804021-8804485
Length = 154
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Frame = +3
Query: 282 DVQHFTPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 437
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE PE
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 438 TVESRLSSDGVLTVIAPRKVPE 503
+++ + +GVLTV P++ P+
Sbjct: 123 QIKASM-ENGVLTVTVPKEEPK 143
>03_02_0478 + 8775892-8776377
Length = 161
Score = 44.0 bits (99), Expect = 8e-05
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Frame = +3
Query: 282 DVQHFTPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 437
DV EE+ V+ DG I+ + G+ EEK DQ + R +F RR+ LP+ PE
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 438 TVESRLSSDGVLTVIAPRK 494
+++ + +GVLTV P++
Sbjct: 130 QIKASM-ENGVLTVTVPKE 147
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 282 DVQHFTPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 437
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 438 TVESRLSSDGVLTVIAPR 491
V++ L +GVLTV P+
Sbjct: 119 QVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 37.5 bits (83), Expect = 0.007
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 282 DVQHFTPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 437
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 438 TVESRLSSDGVLTVIAPR 491
V++ + +GVLTV P+
Sbjct: 118 QVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 37.1 bits (82), Expect = 0.010
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 282 DVQHFTPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTPE 437
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 438 TVESRLSSDGVLTVIAPR 491
V++ + +GVLTV P+
Sbjct: 119 QVKAGM-ENGVLTVTVPK 135
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 35.1 bits (77), Expect = 0.039
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Frame = +3
Query: 201 PWRHLAATARDVGSCIKADKDKFQVNLDVQHFTPEEISVKTADGYIVVEGKHEEKKDQ-- 374
P R LA + + D + ++ D+ + EE+ V D +V+ G+H++++ +
Sbjct: 122 PRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGA 181
Query: 375 ----HGYISRQ----FTRRYALPEGCTPETVESRLSSDGVLTVIAPRKVPEALEGERKVP 530
G+ + + R ALP+ C V + L +GVL V P+ E ERKV
Sbjct: 182 EGSGDGWWKERSVSSYDMRLALPDECDKSKVRAEL-KNGVLLVTVPK-----TEVERKVI 235
Query: 531 IAQTGPVRK 557
Q ++K
Sbjct: 236 DVQIKYLKK 244
>01_01_0227 + 1933247-1933699
Length = 150
Score = 35.1 bits (77), Expect = 0.039
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 342 VEGKHEEKKDQHGYISRQFTRRYALPEGCTPETVESRLSSDGVLTVIAPRK 494
V+GK++E+ S +F RR+ LP G + V + + +GVLTV P++
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>02_02_0077 - 6586638-6587165
Length = 175
Score = 33.1 bits (72), Expect = 0.16
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Frame = +3
Query: 150 DLLNASIGPMVKNEYYRPWRHLAATARDVGSCIKADKDKFQVNLDVQHFTPEEISVKTAD 329
D L + P + Y R R +A T DV ++A + +D+ P ++ V+ D
Sbjct: 26 DELERQLNPPTR-AYVRDRRAMANTPMDVKE-LRAS-GALVLAVDMPGVAPADVRVEVED 82
Query: 330 GYIV-VEGKHEEKK---DQHG----YISRQ-----FTRRYALPEGCTPETVESRLSSDGV 470
G ++ + G+ D G Y+ + F RR+ LPE + V + DGV
Sbjct: 83 GNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYK-DGV 141
Query: 471 LTVIAPRKVPEALEGERKVPIAQTG 545
LTV +K P + R V + G
Sbjct: 142 LTVTVDKKPPPEPKKPRVVEVKVAG 166
>06_01_1017 - 7951985-7952425
Length = 146
Score = 31.9 bits (69), Expect = 0.36
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +3
Query: 309 ISVKTADGYIVVEGKHEEKKDQHGYISR----QFTRRYALPEGCTPETVESRLSSDGVLT 476
++V+ A + E + E +KD +++ +F R ALP E + + + + GVLT
Sbjct: 65 LTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDN-GVLT 123
Query: 477 VIAPRKVPEALEGERKVPIA 536
V+ P++ A R + ++
Sbjct: 124 VVVPKEPAPARPRTRPIAVS 143
>12_02_0849 -
23640091-23640279,23640537-23640677,23640756-23642203,
23642300-23642372,23642452-23642572,23642689-23642791,
23642979-23643052,23643140-23643285,23643368-23643476,
23643580-23643704,23643989-23644342,23644440-23644503,
23644581-23645032
Length = 1132
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 517 SPSSASGTFLGAITVSTPSEDSRDSTVSG 431
S S+ +G+ LG +TVSTP DS +S +G
Sbjct: 819 SASTDNGSLLGEVTVSTPKPDSIESIPTG 847
>10_07_0141 + 13347648-13348331
Length = 227
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 378 GYISRQFTRRYALPEGCTPETVESRLSSD-GVLTVIAPRKVPEAL 509
G+I+ +F RRY + + TPE E+ L+ D +L ++ P AL
Sbjct: 31 GFITNKFGRRYGVGDHGTPE--EAALAHDRAILAILGAHASPAAL 73
>11_06_0738 - 26807046-26807129,26807720-26807957,26809374-26811509,
26812145-26813253
Length = 1188
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/52 (23%), Positives = 31/52 (59%)
Frame = +3
Query: 243 CIKADKDKFQVNLDVQHFTPEEISVKTADGYIVVEGKHEEKKDQHGYISRQF 398
C+ +++ + + +HF E++S K+A V++ +H+E + H ++ R++
Sbjct: 1038 CVGTREEECRTPMKQEHFVKEDLSEKSA----VLQNEHDE--EAHKFVDRRY 1083
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 402 RRYALPEGCTPETVESRLSSDGVLTV-IAPR 491
RR ALP G PE ESR S V + I+PR
Sbjct: 105 RRKALPNGSDPENEESRSSKMAVRSANISPR 135
>11_02_0016 - 7380933-7382027
Length = 364
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 278 IHLELVFVCFDTGTDVSGGGGE--MTPRAVVFVFYH 177
+ L + C TG + GGGGE T V VF+H
Sbjct: 61 LRARLFYPCRPTGGEAGGGGGEAGATKPLPVVVFFH 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,417,450
Number of Sequences: 37544
Number of extensions: 286872
Number of successful extensions: 832
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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