Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_J04
         (565 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock p...   136   6e-34
AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.     23   5.2  
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    23   6.9  

>AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock
           protein protein.
          Length = 133

 Score =  136 bits (328), Expect = 6e-34
 Identities = 62/111 (55%), Positives = 76/111 (68%)
 Frame = +3

Query: 231 DVGSCIKADKDKFQVNLDVQHFTPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRY 410
           D GS +   KDKFQ+NLDVQ F+PEEISVK  D  ++VEGKHEEK+D HGY+SR F RRY
Sbjct: 3   DSGSAVNISKDKFQINLDVQQFSPEEISVKYVDNCVLVEGKHEEKQDDHGYVSRHFVRRY 62

Query: 411 ALPEGCTPETVESRLSSDGVLTVIAPRKVPEALEGERKVPIAQTGPVRKEL 563
            LP+G     + S LSSDG+LT+  PRK  E    ER +PI  TG   K++
Sbjct: 63  MLPKGHNEADIVSSLSSDGILTITCPRKEIEQKNEERSIPITHTGQPMKQV 113


>AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 51  NLKMSLLPFLFDYEIERPRRLLDQHFGLAITPEDLLN 161
           +L  +LLP +++ E E+ +  L     +AIT +   N
Sbjct: 149 SLSNALLPSVYNQEFEKAKEKLSTAKAIAITSDGWTN 185


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 381 TRVGPSSPRVSLQRLCTRQRSSLISPP 301
           TR  PSSPR++    C    SS+ S P
Sbjct: 47  TRSTPSSPRLAQASTCPVPCSSIWSRP 73


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,725
Number of Sequences: 2352
Number of extensions: 9313
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)