Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I23
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   2.5  
SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr ...    27   2.5  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    25   7.7  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    25   7.7  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   7.7  

>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 235 GVTGVCNWGIYENGVYREECYCSNDECNSSASTKSSLLLILATV 366
           G+    NWG Y +G+     Y  N    +S S+ SS+    ATV
Sbjct: 317 GINWYYNWGSYSSGLSSSFEYVLNQHDANSLSSASSVFTGGATV 360


>SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 184

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
 Frame = +1

Query: 199 QVIRRCASVAETGVTGVCNWGIYENGVYREECYC-----SNDECNSSASTKSSLLLILAT 363
           Q I  C S  +  +TGV  +G+Y +G Y    +C     + D  N S +    +   L  
Sbjct: 72  QAIFECCS--KNSLTGVQIFGMYNDGTYELRSFCPVHGVNEDPANGSGAGSVGVFFALNN 129

Query: 364 VGII 375
             II
Sbjct: 130 PSII 133


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 212 AVHQWLRQESPVSAIGEYMRTEFIGKNATVLTMSVT 319
           A H+W R+ S +  +   ++    G+NAT    S+T
Sbjct: 57  ASHKWTREHSGLFDVSHMVQWFVRGENATAYLESIT 92


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 312 LIVRTVAFFPINSVLIYSP 256
           L+  TV F P+NS  IY P
Sbjct: 305 LVNTTVVFLPVNSTEIYHP 323


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -1

Query: 262 FPNCRHR*LLSQPLMHSDE*PDAIDHPI*SLWVLVE*VSYRRHQAYE 122
           +  CR   +  + +++ D   D +D P  ++W+ +E  S RR+  ++
Sbjct: 378 YHQCRWNYVSEEDVLNVDAKFDEVDMPYDTIWLDIEYASKRRYFTWD 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,144
Number of Sequences: 5004
Number of extensions: 50911
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)