Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I23
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0164 + 10972526-10972723,10972818-10973549,10974148-109742...    27   7.8  
04_03_0624 - 18115559-18115725,18115993-18116872                       27   7.8  
03_04_0125 - 17487746-17487847,17488025-17488555,17488834-174891...    27   7.8  

>11_03_0164 +
           10972526-10972723,10972818-10973549,10974148-10974285,
           10974522-10974991,10975069-10975239,10975320-10975602,
           10975682-10975795
          Length = 701

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/55 (27%), Positives = 20/55 (36%)
 Frame = +1

Query: 16  YQCASSQDNKGEDTCGAYKKFDKESHIAVECGSDESHMPGAFCMKLTQQGPKGFI 180
           Y     + N G    G  K F     +  +CG    H   +F   +T   PKG I
Sbjct: 613 YVAKGERHNDGHSKLGYKKDFPIRQQVGDQCGFHVCHNMRSFADNVTLLDPKGKI 667


>04_03_0624 - 18115559-18115725,18115993-18116872
          Length = 348

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -2

Query: 561 PD*ISWYQSSID---NYNMYVQYAPCLYQ*YXXXXXXIFSQSYQTFTTFMIHNGYY 403
           P  + +YQ S D   N      ++PC Y          FS++Y T + F   N YY
Sbjct: 174 PKGLQYYQISFDPRFNTTEIYNFSPCSYAALVESSRFKFSKNYSTSSAF---NDYY 226


>03_04_0125 -
           17487746-17487847,17488025-17488555,17488834-17489102,
           17489161-17489257,17491060-17491161,17491235-17491367,
           17491589-17491681,17491756-17491844,17493578-17493700,
           17496908-17497004,17497440-17497639
          Length = 611

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 523 LQHVCAVCTVPVSMILNFNHKDLQSVISNIHNFHD 419
           ++ V  +C     +ILNF+ KDL+  I +  N  D
Sbjct: 334 VRQVNELCDQSTPVILNFSRKDLEQAIEHFKNTGD 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,340,005
Number of Sequences: 37544
Number of extensions: 314722
Number of successful extensions: 722
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)