Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I23
         (565 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D28915-1|BAA06043.1|  444|Homo sapiens hepatitis C-associated mi...    31   3.7  
BC022870-1|AAH22870.1|  444|Homo sapiens interferon-induced prot...    31   3.7  

>D28915-1|BAA06043.1|  444|Homo sapiens hepatitis C-associated
           microtubular aggregate protein p44 protein.
          Length = 444

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +1

Query: 139 FCMKLTQ-QGPKGFIWDGRWRQVIRRCASVAETGVTGVCNWGIYENGVYREECYCSNDEC 315
           FC  +T+   P  F  DGR R+VI    ++   G+   C   I +  V+R E      + 
Sbjct: 101 FCCDVTKYNSPTNFQIDGRNRKVIMDLKTMENLGLAQNCTISIQDYEVFRCEDSLDERKI 160

Query: 316 NSSASTKSSLLLILAT 363
                 + SLL  L T
Sbjct: 161 KGVIELRKSLLSALRT 176


>BC022870-1|AAH22870.1|  444|Homo sapiens interferon-induced protein
           44 protein.
          Length = 444

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +1

Query: 139 FCMKLTQ-QGPKGFIWDGRWRQVIRRCASVAETGVTGVCNWGIYENGVYREECYCSNDEC 315
           FC  +T+   P  F  DGR R+VI    ++   G+   C   I +  V+R E      + 
Sbjct: 101 FCCDVTKYNSPTNFQIDGRNRKVIMDLKTMENLGLAQNCTISIQDYEVFRCEDSLDERKI 160

Query: 316 NSSASTKSSLLLILAT 363
                 + SLL  L T
Sbjct: 161 KGVIELRKSLLSALRT 176


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,501,492
Number of Sequences: 237096
Number of extensions: 1863555
Number of successful extensions: 3405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3405
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)