Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_I23
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81076-12|CAB03061.2| 161|Caenorhabditis elegans Hypothetical p... 35 0.046
AF016668-3|AAO12441.1| 126|Caenorhabditis elegans Hypothetical ... 35 0.046
U64851-3|AAC47988.1| 160|Caenorhabditis elegans Hypothetical pr... 34 0.081
U41749-3|AAB52485.2| 120|Caenorhabditis elegans Hypothetical pr... 32 0.25
Z70757-10|CAE18045.2| 117|Caenorhabditis elegans Hypothetical p... 31 0.76
AL023828-27|CAI46622.1| 308|Caenorhabditis elegans Hypothetical... 30 1.3
Z99281-19|CAD56260.1| 317|Caenorhabditis elegans Hypothetical p... 29 2.3
Z81575-3|CAB04629.2| 313|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z66519-6|CAA91374.3| 394|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z72512-1|CAA96663.2| 326|Caenorhabditis elegans Hypothetical pr... 28 4.0
U88183-3|AAB52656.2| 593|Caenorhabditis elegans Warthog (hedgeh... 28 4.0
AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related ... 28 4.0
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 5.3
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 28 5.3
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 28 5.3
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.3
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 5.3
Z75527-5|CAA99776.1| 340|Caenorhabditis elegans Hypothetical pr... 27 9.3
U41541-2|ABA54426.1| 526|Caenorhabditis elegans Hypothetical pr... 27 9.3
U41541-1|ABA54425.1| 795|Caenorhabditis elegans Hypothetical pr... 27 9.3
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 27 9.3
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 27 9.3
AC006675-11|AAK84552.1| 326|Caenorhabditis elegans Serpentine r... 27 9.3
>Z81076-12|CAB03061.2| 161|Caenorhabditis elegans Hypothetical
protein F35C5.11 protein.
Length = 161
Score = 34.7 bits (76), Expect = 0.046
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Frame = +1
Query: 133 GAFCMKLTQQGPKGFIWDG-RWRQVIRRCASVAETG---VTGVC-NWGIYENG----VYR 285
G FC+K + G+ +W + CA++ E T C G N R
Sbjct: 66 GTFCLKRAKVYQIGYSGVNLKWTTYTKGCATLREDNDQIPTNTCYELGQVSNSSGYTAKR 125
Query: 286 EECYCSNDECNSSASTKSSLLL-ILATVGIIV 378
+CYC D CNS+ + SL++ IL + I V
Sbjct: 126 MDCYCQKDFCNSTTNLGGSLIMTILFVLSIFV 157
>AF016668-3|AAO12441.1| 126|Caenorhabditis elegans Hypothetical
protein F36H9.7 protein.
Length = 126
Score = 34.7 bits (76), Expect = 0.046
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +1
Query: 184 DGRWRQVIRRCASVAETGVTGVCNWGIYENGVYREECYCSNDECNSSASTKSSLLLILAT 363
DG + V +RCA + G N GI G+ ++C C D CNSS L L
Sbjct: 59 DGTY-YVEKRCAEKTDDLTDGCINIGI--RGIAAKQCLCKTDLCNSSPGQPFRTCLGLGL 115
Query: 364 VGII 375
+G +
Sbjct: 116 LGFL 119
>U64851-3|AAC47988.1| 160|Caenorhabditis elegans Hypothetical
protein F28A12.3 protein.
Length = 160
Score = 33.9 bits (74), Expect = 0.081
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Frame = +1
Query: 133 GAFCMKLTQQGPKGF-IWDGRWRQVIRRCASVAE----TGVTGV--CNWGIYENGVYRE- 288
G FC+K + GF + +W + CASV E T G N + + G E
Sbjct: 68 GTFCIKRAKIHRVGFNSINFKWTSYTKGCASVREDNNQTPSNGCFDLNQKVKKTGYTTER 127
Query: 289 -ECYCSNDECNSSASTKSSLLLI 354
+CYC D CNSS + + +
Sbjct: 128 LDCYCDKDFCNSSTAVSMTFTTV 150
>U41749-3|AAB52485.2| 120|Caenorhabditis elegans Hypothetical
protein F09E10.6 protein.
Length = 120
Score = 32.3 bits (70), Expect = 0.25
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 292 CYCSNDECNSSASTKSSLLLILATV 366
C CS DECN + K+ L+L+ TV
Sbjct: 88 CCCSTDECNDGNNFKNKLILVFLTV 112
>Z70757-10|CAE18045.2| 117|Caenorhabditis elegans Hypothetical
protein ZK287.9 protein.
Length = 117
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 268 ENGVYREECYCSNDECNSSASTKSSLLLILATVGIIVY 381
ENGV ++ C C D CNS S + + V + VY
Sbjct: 79 ENGVTQKWCCCQKDMCNSVNSPMALFSVFFIVVSLWVY 116
>AL023828-27|CAI46622.1| 308|Caenorhabditis elegans Hypothetical
protein Y17G7B.23 protein.
Length = 308
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +1
Query: 289 ECYCSNDECNSSASTK--SSLLLILATVGIIVY 381
+CYC + CNSS ++ S+LLL + + I+++
Sbjct: 275 QCYCQGELCNSSPPSQLASTLLLSIFSTSILIF 307
>Z99281-19|CAD56260.1| 317|Caenorhabditis elegans Hypothetical
protein Y57G11C.38 protein.
Length = 317
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 214 CASVAETGVTGVCNWGIYENGVYREECYCSNDECNSSASTKSSL 345
C+S + C+ + + + C C++D CNS A +KS+L
Sbjct: 59 CSSTLSSSANISCSAASTSSSI-KSTCSCNSDFCNSLAKSKSAL 101
>Z81575-3|CAB04629.2| 313|Caenorhabditis elegans Hypothetical
protein R08H2.3 protein.
Length = 313
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 201 LTPSTIPYKAFGSLLSKFHT-EGTRHMRFITATLHGDMTLLVEFLVCATS 55
LT IP FG+ + T E RH+++I LH LL FL C T+
Sbjct: 22 LTAIEIPLHTFGAFMIICKTPEKMRHVKWILLLLHFVGALLDIFLSCLTT 71
>Z66519-6|CAA91374.3| 394|Caenorhabditis elegans Hypothetical
protein B0334.6 protein.
Length = 394
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 213 ATNNLTPSTIPYKAFGSLLSKFHTEGTRHMRFITATLHGDMTLLV 79
AT ++TP +IP AF + + F++ ++R + +T + L+V
Sbjct: 96 ATLDVTPLSIPSLAFSTSFNHFYSRIVLYIRTLASTFYKSSVLIV 140
>Z72512-1|CAA96663.2| 326|Caenorhabditis elegans Hypothetical
protein R07B5.3 protein.
Length = 326
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = -2
Query: 183 PYKAFGSLLSKFHTEGTRHMRFITATLHGDMTLLVEFLVCATSIFPFIVLRRRTLVTSSS 4
PY+ ++ + G H+ AT M L + F C + LR+R L+ SS
Sbjct: 184 PYQKGAITITTDNVYGNTHLSIGNATFSSLMMLSIVFTTCLM----IVKLRKRKLLNSSD 239
Query: 3 C 1
C
Sbjct: 240 C 240
>U88183-3|AAB52656.2| 593|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 6 protein.
Length = 593
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = -2
Query: 267 IYSPIADTGDSCLSH*CTATNNLTPSTIPYKAFGSLLSKFHTEGTRHMRFITATLHGDMT 88
IYSP+ TGD ++ + ++ + F SL + + M F ++T GD+
Sbjct: 515 IYSPLTSTGDIIVNRVLASCHSNLALKSLQQTFFSLYKRTSSVFHNLMFFKSSTEEGDLP 574
Query: 87 LLVEFLVCATSIF 49
+ VE L +F
Sbjct: 575 VGVETLTSVMDLF 587
>AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related
protein HOT-2 protein.
Length = 162
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 292 CYCSNDECNSSASTKSSLLLILATV 366
C C D CNS+ T SS+ ++ V
Sbjct: 131 CSCYGDRCNSTIMTSSSIFIVFLLV 155
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 246 TGDSCLSH*CTATNNLTPSTIPYKAFGS-LLSKFHTEGTRHMRFITATLHGD 94
+G+SC C NNLT S + G L + +T+G RH A +GD
Sbjct: 1930 SGESCSPCQCNGNNNLTDSRSCHPNSGDCYLCEQNTDG-RHCESCAAWFYGD 1980
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 246 TGDSCLSH*CTATNNLTPSTIPYKAFGS-LLSKFHTEGTRHMRFITATLHGD 94
+G+SC C NNLT S + G L + +T+G RH A +GD
Sbjct: 1930 SGESCSPCQCNGNNNLTDSRSCHPNSGDCYLCEQNTDG-RHCESCAAWFYGD 1980
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -1
Query: 145 YRRH-QAYEIHHCHTPRRYD 89
YRRH A IHHCH R Y+
Sbjct: 325 YRRHLNAGPIHHCHLRRIYE 344
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -1
Query: 145 YRRH-QAYEIHHCHTPRRYD 89
YRRH A IHHCH R Y+
Sbjct: 325 YRRHLNAGPIHHCHLRRIYE 344
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 246 TGDSCLSH*CTATNNLTPSTIPYKAFGS-LLSKFHTEGTRHMRFITATLHGD 94
+G+SC C NNLT S + G L + +T+G RH A +GD
Sbjct: 1930 SGESCSPCQCNGNNNLTDSRSCHPNSGDCYLCEQNTDG-RHCESCAAWFYGD 1980
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 246 TGDSCLSH*CTATNNLTPSTIPYKAFGS-LLSKFHTEGTRHMRFITATLHGD 94
+G+SC C NNLT S + G L + +T+G RH A +GD
Sbjct: 1930 SGESCSPCQCNGNNNLTDSRSCHPNSGDCYLCEQNTDG-RHCESCAAWFYGD 1980
>Z75527-5|CAA99776.1| 340|Caenorhabditis elegans Hypothetical
protein C15C8.5 protein.
Length = 340
Score = 27.1 bits (57), Expect = 9.3
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +1
Query: 259 GIYENGVYR---------EECYCSNDECNSSASTKSSLLLILATVGIIVYLCKFF*FVIP 411
G+Y NG YR +C CSN++CN ++ + T + Y+ K F
Sbjct: 183 GLYSNGCYRIQVEKRSAMVDCVCSNNKCN-------EMIPEIETGHVRCYMGKDFRNTSQ 235
Query: 412 IMYHESCECLI*LTEDLY 465
+ HE C+ L +D++
Sbjct: 236 VDSHEFCDGDFCLIQDVH 253
>U41541-2|ABA54426.1| 526|Caenorhabditis elegans Hypothetical
protein C41A3.2b protein.
Length = 526
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 279 NSVLIYSPIADTGDSCLSH*CTATNNLTPSTIPYKA 172
N ++Y+P+A T +H CT T N+ P+T K+
Sbjct: 221 NICVVYAPVAAT-----THVCTMTKNVLPTTSSQKS 251
>U41541-1|ABA54425.1| 795|Caenorhabditis elegans Hypothetical
protein C41A3.2a protein.
Length = 795
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 279 NSVLIYSPIADTGDSCLSH*CTATNNLTPSTIPYKA 172
N ++Y+P+A T +H CT T N+ P+T K+
Sbjct: 221 NICVVYAPVAAT-----THVCTMTKNVLPTTSSQKS 251
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 232 TGVT--GVCNWGIYENGVYREECYCSNDECNSSA 327
TG+T VC G + G +E+C C+N CN+S+
Sbjct: 1408 TGMTCNQVCPEGRFGAGC-KEKCRCANGHCNASS 1440
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 232 TGVT--GVCNWGIYENGVYREECYCSNDECNSSA 327
TG+T VC G + G +E+C C+N CN+S+
Sbjct: 1408 TGMTCNQVCPEGRFGAGC-KEKCRCANGHCNASS 1440
>AC006675-11|AAK84552.1| 326|Caenorhabditis elegans Serpentine
receptor, class t protein31 protein.
Length = 326
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +2
Query: 251 AIGEYMRTEFIGKNATVLTMSVTVQLVQNHHYC*FWLLLVLLCIYVNFFNL*YPLCIMKV 430
A+G M+ G + + + +Q V C F L LL +Y+NFF Y + ++
Sbjct: 222 ALGAEMKNVNTGSESYKRSKQIFIQSVL---ICGFNLTASLLYVYMNFFEAPYSIVVVAH 278
Query: 431 VN 436
+N
Sbjct: 279 IN 280
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,201
Number of Sequences: 27780
Number of extensions: 290355
Number of successful extensions: 791
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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