Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I23
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.92 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 142  RRHQAYEIHHCHTPRRYDSPCRI 74
            RRH   E++HC   RR   P R+
Sbjct: 1685 RRHMYEELNHCAPNRRCPPPPRM 1707


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 341 HYC*FWLLLVLLCIYVNFFNL 403
           H C  WL   +LC   +  NL
Sbjct: 107 HLCKLWLTCDVLCCTASILNL 127


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 341 HYC*FWLLLVLLCIYVNFFNL 403
           H C  WL   +LC   +  NL
Sbjct: 107 HLCKLWLTCDVLCCTASILNL 127


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 341 HYC*FWLLLVLLCIYVNFFNL 403
           H C  WL   +LC   +  NL
Sbjct: 107 HLCKLWLTCDVLCCTASILNL 127


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 121 IHHCHTPRRYDSPCRISCMRHKYLPLYCLAK 29
           I H  TP RY  P  I  +  ++LP  CL +
Sbjct: 280 IFHHRTPDRYVMPSWIKMLFLQWLP--CLLR 308


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 121 IHHCHTPRRYDSPCRISCMRHKYLPLYCLAK 29
           I H  TP RY  P  I  +  ++LP  CL +
Sbjct: 280 IFHHRTPDRYVMPSWIKMLFLQWLP--CLLR 308


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 121 IHHCHTPRRYDSPCRISCMRHKYLPLYCLAK 29
           I H  TP RY  P  I  +  ++LP  CL +
Sbjct: 280 IFHHRTPDRYVMPSWIKMLFLQWLP--CLLR 308


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 121 IHHCHTPRRYDSPCRISCMRHKYLPLYCLAK 29
           I H  TP RY  P  I  +  ++LP  CL +
Sbjct: 280 IFHHRTPDRYVMPSWIKMLFLQWLP--CLLR 308


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 121 IHHCHTPRRYDSPCRISCMRHKYLPLYCLAK 29
           I H  TP RY  P  I  +  ++LP  CL +
Sbjct: 280 IFHHRTPDRYVMPSWIKMLFLQWLP--CLLR 308


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 121 IHHCHTPRRYDSPCRISCMRHKYLPLYCLAK 29
           I H  TP RY  P  I  +  ++LP  CL +
Sbjct: 280 IFHHRTPDRYVMPSWIKMLFLQWLP--CLLR 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,539
Number of Sequences: 438
Number of extensions: 3186
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)