Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_I22
(543 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical pr... 30 0.94
AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical ... 30 0.94
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 29 2.2
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 29 2.2
AF078790-10|AAC26931.1| 197|Caenorhabditis elegans Hypothetical... 29 2.2
AF016441-3|AAB65909.2| 744|Caenorhabditis elegans Hypothetical ... 29 2.9
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p... 28 3.8
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine... 28 3.8
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr... 28 5.0
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec... 28 5.0
AF106577-11|AAC78185.1| 322|Caenorhabditis elegans Hypothetical... 28 5.0
AC087079-10|AAK27873.2| 342|Caenorhabditis elegans Hypothetical... 28 5.0
AC024838-6|AAF60823.1| 214|Caenorhabditis elegans Hypothetical ... 28 5.0
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 6.6
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 27 6.6
U97007-8|AAB52293.1| 323|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical ... 27 8.7
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne... 27 8.7
>U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical
protein T23B3.5 protein.
Length = 211
Score = 30.3 bits (65), Expect = 0.94
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 45 KMSGDT-DKAKISDNQDEDKKSGAGDGHTTEDESSQDSKGDAK 170
K GD + K + +DEDKK D +DE +D K D K
Sbjct: 96 KKDGDKKEDDKKDEKKDEDKKDEKKDADEKKDEEKKDDKKDEK 138
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 57 DTDKAKISDNQDEDKKSGAGDGHTTEDESSQDSKGDAKTTAN 182
D DK K + +DE+KK G +DE + K D K A+
Sbjct: 83 DGDK-KEEEKKDEEKKDGDKKEDDKKDEKKDEDKKDEKKDAD 123
>AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical
protein E03H12.5 protein.
Length = 210
Score = 30.3 bits (65), Expect = 0.94
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 45 KMSGDT-DKAKISDNQDEDKKSGAGDGHTTEDESSQDSKGDAK 170
K GD + K + +DEDKK D +DE +D K D K
Sbjct: 96 KKDGDKKEDDKKDEKKDEDKKDEKKDADEKKDEEKKDDKKDEK 138
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 57 DTDKAKISDNQDEDKKSGAGDGHTTEDESSQDSKGDAKTTAN 182
D DK K + +DE+KK G +DE + K D K A+
Sbjct: 83 DGDK-KEEEKKDEEKKDGDKKEDDKKDEKKDEDKKDEKKDAD 123
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 42 GKMSGDTDKAKISDNQDEDKKSGAGDGHTTEDESSQDSKGDAKTTAN 182
G GD +++ + DK SGAG G E+ D G+ N
Sbjct: 569 GTGDGDNNESGNGNGDGSDKNSGAGAGTKPENREGGDGNGNGTGDGN 615
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 42 GKMSGDTDKAKISDNQDEDKKSGAGDGHTTEDESSQDSKGDAKTTAN 182
G GD +++ + DK SGAG G E+ D G+ N
Sbjct: 569 GTGDGDNNESGNGNGDGSDKNSGAGAGTKPENREGGDGNGNGTGDGN 615
>AF078790-10|AAC26931.1| 197|Caenorhabditis elegans Hypothetical
protein F36H12.5 protein.
Length = 197
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 48 MSGDTDKAKISDNQDEDKKSGAGDGHTTEDESSQDSKGDAKTT 176
+S + K K N+D++K D +DE +D K D K T
Sbjct: 149 LSENDGKKKKKKNKDDEKDEKKEDTDGKKDEKKEDDKDDKKKT 191
>AF016441-3|AAB65909.2| 744|Caenorhabditis elegans Hypothetical
protein M03F8.3 protein.
Length = 744
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 54 GDTDKAKISDNQDEDKKSGAGDGHTTEDESSQDSKGDAKTTAN 182
GD D+ K +D ++K GD T ESS S ++ ++++
Sbjct: 689 GDDDEEKEEAGKDAEEKVREGDSDTDLSESSSSSDSESSSSSS 731
>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
protein F35G12.3a protein.
Length = 1077
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 54 GDTDKAKISDNQDEDKKSGAGDGHTTEDESSQDSKG 161
G TD+ + +D+D + G G T+ DE SQ++ G
Sbjct: 725 GKTDRDDSEEEEDDDSRRG---GDTSHDEDSQNTVG 757
>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
serine/threonine kinase protein.
Length = 1077
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 54 GDTDKAKISDNQDEDKKSGAGDGHTTEDESSQDSKG 161
G TD+ + +D+D + G G T+ DE SQ++ G
Sbjct: 725 GKTDRDDSEEEEDDDSRRG---GDTSHDEDSQNTVG 757
>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
protein C29E6.2 protein.
Length = 1193
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 10 DAWNSLSISS*EKCRVIPIKRKSVTIRMKTRNPVQAMVTR 129
D W +L I C VIP+ + + MK R P + ++T+
Sbjct: 644 DQWKNLMIP----CDVIPLDKHRNPVNMKRRTPFRTLLTK 679
>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient
receptor potential subfamilyA-1 protein.
Length = 1206
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 10 DAWNSLSISS*EKCRVIPIKRKSVTIRMKTRNPVQAMVTR 129
D W +L I C VIP+ + + MK R P + ++T+
Sbjct: 657 DQWKNLMIP----CDVIPLDKHRNPVNMKRRTPFRTLLTK 692
>AF106577-11|AAC78185.1| 322|Caenorhabditis elegans Hypothetical
protein F46F5.5 protein.
Length = 322
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 25 LSISS*EKCRVIPIKRKSVTIRMKTRNPVQAMVTRQKTSHHRTPRVMQKPQ 177
L +S+ +I KR+S + + + P + T Q+ HHRTP PQ
Sbjct: 81 LQLSNTTPSPIIEDKRRSTSEPTRRQAPSDSKGTNQR--HHRTPPASSSPQ 129
>AC087079-10|AAK27873.2| 342|Caenorhabditis elegans Hypothetical
protein Y37E3.10 protein.
Length = 342
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 24 AFNFFVGKMSGDTDKAKISDNQDEDKKSGAGDGHTTEDESSQD 152
A F GK + + ++D DE KK GDG E+ES +D
Sbjct: 257 AIEGFKGKFTIKEEARIVTDIDDEKKK---GDGDEDEEESEED 296
>AC024838-6|AAF60823.1| 214|Caenorhabditis elegans Hypothetical
protein Y59E9AL.6 protein.
Length = 214
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 63 DKAKISDNQDEDKKSGAGDGHTTEDESSQDSKGDAK 170
++ K D +DE K DG +DE D K D K
Sbjct: 88 NEKKEGDEKDEKKDEEKKDGDDKKDEKKDDDKKDEK 123
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = +1
Query: 67 KRKSVTIRMKTRNPVQAMVTRQKTSHHRTPRVMQKPQPTVKTMKLAATIQRVTKG 231
KR S T + TR+ +S H T +P V T+ + TKG
Sbjct: 241 KRVSTTTKTSVTETENVTTTRRSSSAHSTHSKRSSAKPEVHTLYYRKFVDEETKG 295
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical
protein T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = +1
Query: 67 KRKSVTIRMKTRNPVQAMVTRQKTSHHRTPRVMQKPQPTVKTMKLAATIQRVTKG 231
KR S T + TR+ +S H T +P V T+ + TKG
Sbjct: 241 KRVSTTTKTSVTETENVTTTRRSSSAHSTHSKRSSAKPEVHTLYYRKFVDEETKG 295
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 57 DTDKAKISDNQDEDKKSGAGDGHTTEDESSQDSKGDAKTT 176
D D K Q DK S G G +DE S+ DA T
Sbjct: 474 DYDLDKDMKKQKNDKDSSEGSGSEPDDEYDSGSEKDASGT 513
>U97007-8|AAB52293.1| 323|Caenorhabditis elegans Hypothetical
protein ZC196.2 protein.
Length = 323
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 103 NPVQAMVTRQKTSHHRTPRVMQKPQPTVKTMKLAATIQRVTKG 231
+P+Q + K+SHH T + +Q+ K++K + V G
Sbjct: 146 SPIQNVSDDGKSSHHSTAKQLQENNENSKSLKYTKQLVEVPLG 188
>AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical
protein C35E7.9 protein.
Length = 301
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 45 KMSGDTDKAKISDNQDEDKKSGAGDGHTTEDESSQDSKGDAK 170
K GD K +++ +DKKSG+ D E++ ++ K + K
Sbjct: 131 KEKGDDKK----EDEKDDKKSGSKDAEKKEEKKEEEKKEEKK 168
>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
neurexin-like protein 1 protein.
Length = 1655
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 24 AFNFFVGKMSGDTDKAKISDNQDEDKKSGAGDGHTTEDESSQDSKGDA 167
A N+ + + D +K D DED+ +G D + T+D + ++ D+
Sbjct: 1529 ASNYKIPNPNIDFNKENTFDYDDEDEFAGIADDNVTDDVTVRNEVDDS 1576
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,030,399
Number of Sequences: 27780
Number of extensions: 105621
Number of successful extensions: 653
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -