Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I21
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0251 + 42289617-42291241,42291424-42292156                       31   0.37 
01_05_0281 - 20334578-20334961,20335859-20336005,20336088-203361...    27   4.6  
12_02_0750 + 22764481-22764771,22764871-22765383,22765470-227656...    27   6.1  
12_01_0026 + 219663-220843,222201-222447,222574-224535                 26   8.1  
07_03_0067 + 13018729-13019187,13019197-13019901                       26   8.1  
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960...    26   8.1  
01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644...    26   8.1  

>01_07_0251 + 42289617-42291241,42291424-42292156
          Length = 785

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +2

Query: 116 QKLTITFLILKKGGVHVGLLSTLSVLNPISGNVHGTIETCQ*VSSVTVHSGDSSDAF 286
           +++   F ++++GG+ +   +  SV+   SG   GT++  + V    + +G  SD F
Sbjct: 192 EEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVF 248


>01_05_0281 -
           20334578-20334961,20335859-20336005,20336088-20336141,
           20336391-20336555,20337331-20337855
          Length = 424

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
 Frame = +2

Query: 11  RRTTAYDFDRADTVRAELRRVP----HTAKYTLGKQYFHQKLTITFLILKKGGVHVGLLS 178
           R ++   F RA T R     V     H   Y  G++Y+  K +I     K        LS
Sbjct: 150 RASSVRRFGRAPTARVRRDSVSGGHEHAVGYVAGEEYYGAKASINVWAPKVSTPEEFSLS 209

Query: 179 TLSVLNPISGNVHGTIETCQ*VSSVTVHSGDSSDAFY 289
            + V+    GN   TIE    VS      GD+S  F+
Sbjct: 210 QIWVIAGSFGNDLNTIEAGWQVSPQLY--GDNSPRFF 244


>12_02_0750 +
           22764481-22764771,22764871-22765383,22765470-22765601,
           22765731-22766108
          Length = 437

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 179 TLSVLNPISGNVHGTIETCQ*VSSVTVHSGDSSDAFYNTGLCMYIRGASDXTLSVKG 349
           TLS +N     +HG +  C  + S+ + +         + L +   G SD   SV+G
Sbjct: 155 TLSQVNIADSILHGILSRCIVLESLVLDANRGCSRLRISSLTLQSLGVSDTYFSVEG 211


>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 287 RMHQNCRRNER*PMKPIGKF 228
           R+HQ+C+R  R P KP  ++
Sbjct: 501 RLHQDCQRINRDPYKPFPRY 520


>07_03_0067 + 13018729-13019187,13019197-13019901
          Length = 387

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 236 GKFQWYRVRFHLLDSGQTEWRVSRRAPH 153
           G  +W+    H+  +GQT+W  ++R  H
Sbjct: 155 GDLEWHGRAVHVAAAGQTKWWFAKRFLH 182


>04_04_1371 +
           32995337-32995358,32995745-32995822,32995876-32996019,
           32997595-32997930,32998014-32998166,32998286-32998501,
           32998600-33000695
          Length = 1014

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
 Frame = +2

Query: 173 LSTLSVLNPISGNVHGTIETCQ*--VSSVTVH----SGDSSDAFYNTGLCMYI 313
           L+++ +L+  + N+ G+I  C    +SS+ ++    SG+ SD  +NT   MY+
Sbjct: 666 LASIEILDLSNNNLSGSIPRCASASLSSLNLYGNSLSGNISDDLFNTSNLMYL 718


>01_06_0959 -
           33362810-33363125,33363309-33363475,33363583-33364410,
           33364483-33364719,33365455-33365871,33365951-33366412,
           33367197-33367382
          Length = 870

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 143 LKKGGVHVGLLSTLSVLNPISGNVHGTIETCQ 238
           L KG VH        V +PISG +  T   C+
Sbjct: 531 LLKGAVHGAAAFATGVSSPISGAIASTFHNCK 562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,000,389
Number of Sequences: 37544
Number of extensions: 186891
Number of successful extensions: 380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)