Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I21
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine re...    27   4.2  
Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal enha...    26   9.7  
U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal enha...    26   9.7  
AL132848-2|CAB60385.2|  333|Caenorhabditis elegans Hypothetical ...    26   9.7  
AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal en...    26   9.7  

>AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform b protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +2

Query: 89  YTLGKQYFHQKL-TITFLILKKGGVHVGLLSTLSV 190
           Y+LGK Y++Q L  I+FL++     H GL+ST+++
Sbjct: 264 YSLGKMYYNQALNNISFLVISS---H-GLVSTIAM 294


>Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical
           protein C14H10.3 protein.
          Length = 830

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 222 PLKLANRFHRSPFIPATVLM 281
           P++LANR +++ F P TVL+
Sbjct: 452 PVELANRVYKNKFTPPTVLI 471


>U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical
           protein C01F1.1 protein.
          Length = 481

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 44  DTVRAELRRVPHTAKYTLGK 103
           +TVR  LRR PHT K  L K
Sbjct: 414 ETVRRYLRRKPHTTKELLHK 433


>U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform b protein.
          Length = 169

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 86  WRCVVLSAVQHGQYLPCQSRTQL 18
           WRCV    +  GQ+  C++ T +
Sbjct: 84  WRCVCAKKMHDGQWCKCRAETTM 106


>U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform a protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 86  WRCVVLSAVQHGQYLPCQSRTQL 18
           WRCV    +  GQ+  C++ T +
Sbjct: 84  WRCVCAKKMHDGQWCKCRAETTM 106


>AL132848-2|CAB60385.2|  333|Caenorhabditis elegans Hypothetical
           protein Y47H10A.3 protein.
          Length = 333

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -3

Query: 246 ETYWQVSMVPCTFPLIGFRTDRVESKPTCTPP 151
           +TYWQ         +IG RT   E  P   PP
Sbjct: 204 QTYWQAFFGNVPVLIIGSRTGLYERDPKTMPP 235


>AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal
           enhancer binding protein-1 protein.
          Length = 425

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 86  WRCVVLSAVQHGQYLPCQSRTQL 18
           WRCV    +  GQ+  C++ T +
Sbjct: 82  WRCVCAKKMHDGQWCKCRAETTM 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,722,236
Number of Sequences: 27780
Number of extensions: 169985
Number of successful extensions: 351
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)