Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I21
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   8.1  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 204 VETYTVPLKLANRFHRSPFIPATVLMHSIILDYVCILEVRAXLRFLSKGSQFSF 365
           ++ +  P++  +  +RSP  PATV        Y    + RA   ++ K S+F F
Sbjct: 321 IDEFKTPMRNDSERNRSPVRPATV-------QYDTCCQGRATAIYIDKVSRFFF 367


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 243 TYWQVSMVPCTFPLIGFRTDR 181
           T W +S V C  PL+G++  R
Sbjct: 188 TVWILSFVICFPPLVGWKDKR 208


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 204  VETYTVPLKLANRFHRSPF 260
            VE Y + L+  NR+H   F
Sbjct: 1100 VEAYMLSLRDENRYHEDIF 1118


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 10/15 (66%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = +3

Query: 222 PLKLANRFHR-SPFI 263
           P KLAN+F+R SP I
Sbjct: 4   PQKLANKFYRISPQI 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,089
Number of Sequences: 438
Number of extensions: 2156
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)