Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I20
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   184   7e-48
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    28   1.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   5.4  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   7.1  
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    25   9.4  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   9.4  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   9.4  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  184 bits (449), Expect = 7e-48
 Identities = 86/138 (62%), Positives = 109/138 (78%), Gaps = 1/138 (0%)
 Frame = +2

Query: 236 KVQKPAPDFAATAVVNGEFNLLKLSDFSGKYVVLFFYPLDFTFVCPTELIAFSDRAKDFA 415
           ++ KPAPDF  TAVVNG F  +KL+D+ GK+V L FYPLDFTFVCPTE++AFS+ A  FA
Sbjct: 4   QIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFA 63

Query: 416 GIGCQVIGVSTDSEFSHLAWINTPRKDGGLGKLDFPLLADYQNKISQDYDVLL-DEGFAL 592
               QVI  STDSE+SHLA+INTPRK+GGLG ++ PLLAD  +K+S+DY VL+ D G A 
Sbjct: 64  ERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAF 123

Query: 593 RGLFVIDGKGILRHMSVN 646
           RGLF+ID KG+LR +++N
Sbjct: 124 RGLFLIDPKGVLRQITIN 141


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +2

Query: 215 SSITLAPKVQKPAPDFAATAVVNGEFNLLKLSDFSGKYVVLFFYPLDFTFVCPTE 379
           SS TL    Q P P F   +  +G+F     +    K V L  YP   TF   TE
Sbjct: 260 SSSTLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 205 LINKQHNLSSQSTKACSGFCCYSSSEW 285
           L+    +LSSQ   +C   CC SSS W
Sbjct: 257 LVKTSESLSSQQM-SCLRICCNSSSFW 282


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 68  LYTDLFCSFIIIHYN-CILSVKMSFL-LKQVTRRIITPAFAALKNINFLSTSSITLAPKV 241
           L   LF + +++ +N C+    +S+  LK+ T          L++++      + + PK 
Sbjct: 561 LSISLFQACVLLQFNNCLGGEGISYQDLKKSTELSDIDLTRTLQSLSCARIRPLVMVPKS 620

Query: 242 QKPAPD 259
           +KP+PD
Sbjct: 621 KKPSPD 626


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 299 LKLSDFSG-KYVVLFFYPLDFTFVCPTELIAFSDRAKDFAGIGCQVIGVSTDSEFSHLAW 475
           ++L D +  K +V+F YP   T  C  +   F D          +V+G+S D+  +  A+
Sbjct: 65  IRLRDITANKGLVIFAYPKASTPGCTKQGCGFRDNYPKIQASDYEVLGLSFDTSKAQKAF 124


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 533 RPTMENLVFPNHHPF*EY*SKPSD*TQNLLIHQLPDSQY 417
           R T++ L F NH+PF E    P     + LI    DS Y
Sbjct: 651 RDTLQWLYFSNHYPFNEEGKGPQVDDSDALITIALDSLY 689


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/63 (20%), Positives = 30/63 (47%)
 Frame = -3

Query: 499 TILSRSIDPSQVTELRIC*YTNYLTANTGEIFGPITECDQFSGANKSEIQGIKEQYNIFS 320
           T+ S+ I  SQ  +  +   T+    + G  +  + E D+F   ++ +    +E+Y ++ 
Sbjct: 48  TVASQEISDSQEEDTTL---TSSQFEDCGTEYNEVVEDDEFRSEDEDDFMDEEEEYALYE 104

Query: 319 REI 311
            E+
Sbjct: 105 AEL 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,265
Number of Sequences: 5004
Number of extensions: 64977
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)