Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_I20
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 96 2e-20
06_01_0671 - 4899611-4899829,4900870-4901448 62 5e-10
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 61 9e-10
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 55 4e-08
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 35 0.048
02_02_0551 - 11423041-11423104,11423315-11423571 35 0.048
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 33 0.20
06_03_0811 + 24830496-24831194 30 1.4
02_02_0457 + 10503801-10507358 29 3.2
10_06_0033 + 9865963-9866090,9868173-9868253,9868358-9868375,986... 28 5.6
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 96.3 bits (229), Expect = 2e-20
Identities = 47/79 (59%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = +2
Query: 230 APKVQKPAPDFAATAVVNGEFNLLKLSDFSGK-YVVLFFYPLDFTFVCPTELIAFSDRAK 406
AP V APDF A AV + EF +KLSD+ GK YV+LFFYPLDFTFVCPTE+ AFSDR
Sbjct: 67 APLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYD 126
Query: 407 DFAGIGCQVIGVSTDSEFS 463
+F + +++GVS DS +S
Sbjct: 127 EFEKLNTEILGVSIDSVWS 145
Score = 81.8 bits (193), Expect = 4e-16
Identities = 34/64 (53%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Frame = +2
Query: 458 FSHLAWINTPRKDGGLGKLDFPLLADYQNKISQDYDVLL-DEGFALRGLFVIDGKGILRH 634
FSHLAW+ T RK GGLG L +PL++D IS+ + VL+ D+G ALRGLF+ID +G+++H
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 635 MSVN 646
++N
Sbjct: 272 STIN 275
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 61.7 bits (143), Expect = 5e-10
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Frame = +2
Query: 299 LKLSDFSGKYVVLFFYPLDFTFVCPTELIAFSDRAKDFAGIGCQVIGVSTDSEFSHLAWI 478
+ LS F G+ VV++FYP D T C + AF D + F G +VIG+S D SH +
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEF- 195
Query: 479 NTPRKDGGLGKLDFPLLADYQNKISQDYDVLLDEGFALRG--LFVIDGKGILRHMSVN 646
+K KL F LL+D NK+ +++ V D L G +V+D G+++++ N
Sbjct: 196 --KKK----YKLPFTLLSDEGNKVRKEWGVPADLFGTLPGRQTYVLDKNGVVQYIYNN 247
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 60.9 bits (141), Expect = 9e-10
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +2
Query: 299 LKLSDFSGK-YVVLFFYPLDFTFVCPTELIAFSDRAKDFAGIGCQVIGVSTDSEFSHLAW 475
+++ DF G YV+LF +P DFT VC TEL A + AK+F G +++G+S D SH W
Sbjct: 57 IRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDW 116
Query: 476 INTPRKDGGLGKLDFPLLAD 535
I ++ +P++AD
Sbjct: 117 IKDIEAYKPGNRVTYPIMAD 136
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 299 LKLSDFSGK-YVVLFFYPLDFTFVCPTELIAFSDRAKDFAGIGCQVIGVSTDSEFSHLAW 475
++L DF G YV++F +P DFT VC TEL + A +F G +++G S D SH W
Sbjct: 22 IRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKDW 81
Query: 476 INTPRKDGGLGKLDFPLLAD 535
I ++ FP++AD
Sbjct: 82 IKDIEAYKPGRRVGFPIVAD 101
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 35.1 bits (77), Expect = 0.048
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 362 FVCPTELIAFSDRAKDFAGIGCQVIGVSTDS 454
FV E+ AFSDR ++F I +V+GVS DS
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSIDS 78
Score = 34.7 bits (76), Expect = 0.064
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = +2
Query: 581 GFALRGLFVIDGKGILRHMSVN 646
G ALRGLF+ID +G+++H ++N
Sbjct: 80 GIALRGLFIIDKEGVIQHSTIN 101
>02_02_0551 - 11423041-11423104,11423315-11423571
Length = 106
Score = 35.1 bits (77), Expect = 0.048
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +2
Query: 134 SFLLKQVTRRIITPAFAALKNINFLSTSSITLAPKVQKPAPDFA 265
S L K+ RR+ P+ A+L ++ +LSTSS+T+A +QK A DF+
Sbjct: 41 SRLSKKRLRRLFAPSPASLLHLRWLSTSSLTVA--LQKVADDFS 82
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 33.1 bits (72), Expect = 0.20
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Frame = +2
Query: 131 MSFLLKQVTRRIITPAFAALKNINFLSTSSITLAPKVQKPAPDFAATAVVNGEFNLLK-- 304
+SFLL VT I + K + + T A K Q+P+ TA + G FNLL
Sbjct: 136 LSFLLLLVTGGGIIVYYDKEKKRHIEELKNRTSAVK-QEPS---VGTAAIGGPFNLLNHD 191
Query: 305 -----LSDFSGKYVVLFFYPLDFTFVCPTELIAFS---DRAKDFAGIGCQVIGVSTDSE 457
DF GK+ +L+F +CP EL + D+ K+ A + + ++ D E
Sbjct: 192 GKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAIDKIKEKAKMEVVPVFITVDPE 250
>06_03_0811 + 24830496-24831194
Length = 232
Score = 30.3 bits (65), Expect = 1.4
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Frame = +2
Query: 281 NGEFNLLKLSDFS-GKYVVLFFYPLDFTFVCPTELI-AFSDRAKDFAGIGCQVIG-VSTD 451
+GE + + D + GK VVLF P FT C + + F +A + G + VS +
Sbjct: 89 DGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVN 148
Query: 452 SEFSHLAWINTPRKDGGLGKLDFPLLADYQNKISQDYDVLLD 577
F AW ++ G+G + LL+D ++++ V LD
Sbjct: 149 DAFVMRAW----KESLGVGD-EVLLLSDGNGELARAMGVELD 185
>02_02_0457 + 10503801-10507358
Length = 1185
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 176 AFAALKNINFLSTSSI---TLAPKVQKPAPDFAATAVVNGEFNLLKLSDFSGKYVVLFFY 346
A AALKN +++T ++ ++ +VQK + + + L L+ G+++ +F+
Sbjct: 748 AKAALKNKKYVNTMTLKWSSMGQQVQK-LTEVLQVLIPPTSLSYLNLTGCPGEFLPTWFH 806
Query: 347 PLDFTFVCPTELIAFSD 397
P + + ELIA D
Sbjct: 807 PSNLPMLTSLELIACHD 823
>10_06_0033 +
9865963-9866090,9868173-9868253,9868358-9868375,
9869257-9869374,9869724-9869795,9870049-9870066,
9870231-9870551,9870652-9870760,9871562-9871736,
9871761-9871828,9873147-9873227,9873541-9873767
Length = 471
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 333 TTYFPEKSDNFKRLNSPFTTAVAAKSGAGF 244
TT FPE+ NF R SP + + GA +
Sbjct: 234 TTQFPEQESNFIRSPSPHGPSAMTRKGANY 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,875,142
Number of Sequences: 37544
Number of extensions: 380868
Number of successful extensions: 787
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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