Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I20
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   182   2e-46
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   173   9e-44
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    46   3e-05
Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich ...    29   3.8  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  182 bits (443), Expect = 2e-46
 Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 1/137 (0%)
 Frame = +2

Query: 239 VQKPAPDFAATAVVNGEFNLLKLSDFSGKYVVLFFYPLDFTFVCPTELIAFSDRAKDFAG 418
           + KPAP F   AVV+GEF  + LSD+ GKYVVLFFYPLDFTFVCPTE+IAFSDRA++F  
Sbjct: 6   IGKPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKA 65

Query: 419 IGCQVIGVSTDSEFSHLAWINTPRKDGGLGKLDFPLLADYQNKISQDYDVLL-DEGFALR 595
           I   V+  STDS FSHLAWIN PRK GGLG+++ P+LAD  ++IS+DY VL  DEG A R
Sbjct: 66  INTVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFR 125

Query: 596 GLFVIDGKGILRHMSVN 646
           GLF+ID    LR +++N
Sbjct: 126 GLFIIDPSQNLRQITIN 142


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  173 bits (421), Expect = 9e-44
 Identities = 80/151 (52%), Positives = 106/151 (70%), Gaps = 4/151 (2%)
 Frame = +2

Query: 206 LSTSSITLAPKVQKP---APDFAATAVVNGEFNLLKLSDFSGKYVVLFFYPLDFTFVCPT 376
           LSTS   L+ +   P    P F  TAVV+G+F ++   D+ GK++V+FFYPLDFTFVCPT
Sbjct: 21  LSTSRALLSLRPLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPT 80

Query: 377 ELIAFSDRAKDFAGIGCQVIGVSTDSEFSHLAWINTPRKDGGLGKLDFPLLADYQNKISQ 556
           E+IA+ DRA +F  +G +V+  S DS FSHLAW+NTPRKDGGLG +D PLLAD+  KI+ 
Sbjct: 81  EIIAYGDRANEFRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIAD 140

Query: 557 DYDVL-LDEGFALRGLFVIDGKGILRHMSVN 646
            + VL  + G + RGLF+ID  G +RH + N
Sbjct: 141 SFGVLDKESGLSYRGLFLIDPSGTVRHTTCN 171


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
 Frame = +2

Query: 323 KYVVLFFYPLDFTFVCPTELIAFSDRAKDFAGIGCQVIGVSTDSEFSHLAW---INTPRK 493
           ++++LF +P DFT VC TEL      A +F     Q++ +S DS  +H  W   IN+  +
Sbjct: 29  QWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHRDWAKDINSVAQ 88

Query: 494 DGGLGK-LDFPLLADYQNKISQDYDVL 571
               G  L F ++AD    I  +  ++
Sbjct: 89  LSNCGSHLPFEIIADTDRSICTELGMI 115


>Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical
           protein C11E4.4 protein.
          Length = 266

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 37  FLFVVGKIVNTLYRPILF-FHYYSL*LYTKCKNVFPFKTSYPSDNHPR 177
           F F +G  + TL + +L+ FH   +      +  FPF   +PSD++PR
Sbjct: 88  FGFFLGLSIITLIQMVLYGFHSAFMFAKKHIQRKFPFCKIHPSDDYPR 135


>Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical
           protein C50H2.1 protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = +2

Query: 248 PAPDFAATAVVNGEFNLLKLSDFSGKYVVLFFYPLD-----FTFVCPTELIAFSDRAK 406
           P   F  TA +   F LL LS  S K+V++FF+P++     F +V  TE+I    R+K
Sbjct: 652 PTLFFGFTATIG--FPLLSLS--SAKFVLVFFFPINAFANPFLYVFFTEVIQHRVRSK 705


>Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical
           protein C07A9.8 protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 367 LPH*IDRIQ**GQRFRRYWLSGNWCI 444
           LPH +++      R+++YW+S NW +
Sbjct: 207 LPHELEKFNSIKSRYQKYWVSFNWAL 232


>AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich
           repeat-containingG protein-coupled receptor protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = +2

Query: 248 PAPDFAATAVVNGEFNLLKLSDFSGKYVVLFFYPLD-----FTFVCPTELIAFSDRAK 406
           P   F  TA +   F LL LS  S K+V++FF+P++     F +V  TE+I    R+K
Sbjct: 652 PTLFFGFTATIG--FPLLSLS--SAKFVLVFFFPINAFANPFLYVFFTEVIQHRVRSK 705


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,979,771
Number of Sequences: 27780
Number of extensions: 356084
Number of successful extensions: 882
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)