Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I20
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.9  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.4  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   7.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   7.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   7.8  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 476  INTPRKDGGLGKLDFPLLADYQNKISQDYDVLLDEGFALRGLFVIDGKG-ILRHMSVN 646
            +N   +    GK+    + D   KI + +      GF  RGL  + GKG +L H  V+
Sbjct: 922  VNVASRMESTGKVGCIQVTDETRKILEPFGF----GFEQRGLVFVKGKGQLLTHYLVS 975


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 640 RHVPENALTVDYKQTTKCKSFIQED 566
           RH+P +      K   KCKS   ED
Sbjct: 82  RHLPRSMQDSTKKLFNKCKSIQNED 106


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 167 ITPAFAALKNINFLSTSS 220
           + P F ++ NIN LST S
Sbjct: 209 VRPKFPSMDNINGLSTES 226


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 39  FICCRKNCKYSIPTYFVLSLLFIII 113
           F  C KN   +I +YFV  + F +I
Sbjct: 95  FYDCLKNSADTISSYFVGKMYFNLI 119


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 39  FICCRKNCKYSIPTYFVLSLLFIII 113
           F  C KN   +I +YFV  + F +I
Sbjct: 100 FYDCLKNSADTISSYFVGKMYFNLI 124


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +3

Query: 393 VIGPKISPVLAVR*LVYQQILSSVTWLGSILLERMVVWEN 512
           V GPK  P+  +  +    ++  VT     ++  +V+W N
Sbjct: 22  VRGPKYLPLTLIVPITLTYVVIFVTGFVGNIITCIVIWRN 61


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +2

Query: 341 FYPLDFTFVCPTELIAFSDRAKDFAGIGCQVIGV 442
           F   D    CP     ++DR  +   + C  +GV
Sbjct: 752 FDACDCEMTCPAGCKCYNDRTWNTNAVDCSGLGV 785


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 39  FICCRKNCKYSIPTYFVLSLLFIII 113
           F  C KN   +I +YFV  + F +I
Sbjct: 100 FYDCLKNSADTISSYFVGKMYFNLI 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,788
Number of Sequences: 438
Number of extensions: 4506
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)