Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I19
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    67   3e-12
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    28   1.5  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    27   2.0  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   3.6  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   3.6  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    26   4.7  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   4.7  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    26   4.7  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    26   6.2  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   8.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.2  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 45/112 (40%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
 Frame = +1

Query: 250 QIGGEKNGGTRTVLL--KSRKSFYPTQDKIRGRSHGKSFSKHVRRT--RPNLTPGAVCIL 417
           ++ G KNGG R VL   ++   +YP   +    +  K   K VR T  R +L PG VCIL
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRE----NVPKKARKAVRPTKLRASLAPGTVCIL 60

Query: 418 LAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST-KVDL 570
           LAGR  GKR              TGP+  N  P+RR+  RYVI TS  K+D+
Sbjct: 61  LAGRFRGKR-VVVLSQLEDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDV 111


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 541 VIGTSTKVDLGDFKLPGGILDECPNFKKRNKKEL*KRSVKRKQ-GEDIFATTKEK 702
           +IG  T + +   KLPG    +       N+  L  R  K+ Q G D+ A  K+K
Sbjct: 73  IIGLETNLGISKDKLPGNDGSQVAGLVLSNRSGLKGREPKKSQLGLDVLAVQKKK 127


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +1

Query: 280 RTVLLKSRKSFYPTQDKIRGR----SHGKSFSKHVRRTRPNLTP 399
           RT+L +  K FYP      GR     H    SK  R+ R   TP
Sbjct: 102 RTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTP 145


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 131 ETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQP 238
           ET  S S K+G T+RR   S    R +KLK    +P
Sbjct: 3   ETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRP 38


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 26  KQWIPARIGQIWSHAKWRKPRAQRVSEQS 112
           K WI    G +W +A W+      VS  S
Sbjct: 555 KHWIVVENGSLWEYANWKDSVKSNVSSIS 583


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +2

Query: 578 SSYLAASLTNALTLRKETRKSC--ENAASSGSRERT-SLLP 691
           ++++ A  T   T RKE  ++C  +N +S+ SR  + SLLP
Sbjct: 209 TNWIEAEFTRRHTKRKEKERACLSQNQSSNASRANSQSLLP 249


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 616 FKKRNKKEL*K---RSVKRKQGEDIFATTKEKYVP 711
           F+ R+  EL K   R  +RK+ ED+  T K++Y P
Sbjct: 297 FRLRSSAELEKILNRRRRRKKSEDVSITLKDEYEP 331


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 449 CSLECCRVVCYSSLDLL 499
           CSLE   +VCYSSL +L
Sbjct: 764 CSLEVGPIVCYSSLKVL 780


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 50  GQIWSHAKWRKPRAQR 97
           G +W+ A W +PRAQR
Sbjct: 780 GLLWTEAIWLEPRAQR 795


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 148 NGVHRFESYSRST-LF*HPLRARFPP-LGV*PYLADPSRDPLFRAPPPRW 5
           NGV    S  R   LF +PL     P L    + A+ S DP+   P PRW
Sbjct: 364 NGVIALWSVQRKKPLFTYPLAHGLDPILAPGRHSAETSPDPVTIPPQPRW 413


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 93  SGCQNKVEREYDSKRCTPFLQKQD 164
           SGC++KV   + SKR  P L+K +
Sbjct: 292 SGCESKVVEYFISKRPFPSLEKAE 315


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 307 SFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGAVCILLAGRHAGKR 444
           +FY      R  SH  S S     ++P LT  +  +L +  H  +R
Sbjct: 422 AFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYER 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,539
Number of Sequences: 5004
Number of extensions: 63654
Number of successful extensions: 195
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)