Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_I19
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 77 1e-14
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 71 1e-12
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 30 2.1
01_07_0229 + 42161770-42164562 30 2.1
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331 29 2.8
03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879... 29 2.8
02_05_0614 + 30358737-30358923,30359797-30359844,30360590-303606... 29 2.8
08_01_0072 - 513561-513926,514055-514189,514274-514417,514505-51... 29 4.9
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 29 4.9
04_04_0830 + 28491556-28492103,28492713-28492806,28492968-28493054 29 4.9
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 29 4.9
10_07_0138 + 13325418-13325954 28 6.5
12_02_1177 - 26708215-26708309,26708355-26708392,26708476-267095... 28 8.6
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 77.4 bits (182), Expect = 1e-14
Identities = 59/150 (39%), Positives = 74/150 (49%), Gaps = 5/150 (3%)
Frame = +1
Query: 265 KNGGTRTVLLK----SRKSFYPTQD-KIRGRSHGKSFSKHVRRTRPNLTPGAVCILLAGR 429
KNGGT K + FYP D K R S K+ +R T +TPG V ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKANPTKLRST---ITPGTVLILLAGR 87
Query: 430 HAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPGGILDEC 609
+ GKR TGPF N P+RR+ Q YVI TSTKVD+ K+ D+
Sbjct: 88 YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK--FDD- 144
Query: 610 PNFKKRNKKEL*KRSVKRKQGEDIFATTKE 699
+ R+K K K+ +GE +F T KE
Sbjct: 145 -KYFARDK----KAKAKKTEGE-LFETEKE 168
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 70.5 bits (165), Expect = 1e-12
Identities = 55/192 (28%), Positives = 81/192 (42%), Gaps = 4/192 (2%)
Frame = +1
Query: 136 GVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLKSRKSFY 315
G+ + S+S YH++ ++ + K V + +
Sbjct: 10 GIKKASRSHTYHRRGLWA-IKAKHGGAFPKAEKPAAAAAAAAPKFYPADDVKPRQPSTRK 68
Query: 316 PTQDKIRGRSHGK----SFSKHVRRTRPNLTPGAVCILLAGRHAGKRXXXXXXXXXXXXX 483
P K+R S S + + R ++TPG V ILLAGR GKR
Sbjct: 69 PNPTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLL 128
Query: 484 FTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPGGILDECPNFKKRNKKEL*KRSVKR 663
TGPF N P+RR+ Q YVI TSTKVD+ + D+ + R+KK+ K+
Sbjct: 129 VTGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK--FDD--KYFSRDKKQ----KAKK 180
Query: 664 KQGEDIFATTKE 699
+GE +F T KE
Sbjct: 181 TEGE-LFETEKE 191
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 536 RCGILRRGHALKAKGPVKSSRPLGNTPTSTT 444
RCG+ ++GH A GP + P ++ +TT
Sbjct: 23 RCGLPKKGHVCAAGGPAPTPSPSSSSGAATT 53
>01_07_0229 + 42161770-42164562
Length = 930
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2
Query: 128 LETVYSVSPKAGCTTRRLYISLSVRRTRKLKS 223
L+T + SPKA T R+ Y+S S+R T LKS
Sbjct: 889 LDTSVASSPKAFFTKRQPYLSSSIRYTSFLKS 920
>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
Length = 599
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 491 PVKSSRPLGNTPTSTTRLPACLPANRMHTAPGVRLGLVLRTCLL 360
P ++ P+ +TP+ T + CLPA+R T R +LR L+
Sbjct: 258 PTWTTSPILSTPSHTWQRSLCLPASRSFTPRKSRRDQLLRLALV 301
>03_02_0481 +
8789890-8789949,8790325-8790441,8790532-8790601,
8790688-8790836,8791520-8791621,8791692-8791892,
8792589-8792651,8792791-8793009,8793681-8793755,
8794003-8794101,8794521-8794691
Length = 441
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 48 SARYGHTPSGGNRARSGCQNKVEREYDSKRCTPFLQKQDV-PQEGYI 185
SARY PS + A C ++R Y+S R Q+ V EG+I
Sbjct: 27 SARYNQDPSLVDEAELECHQNLQRLYNSTRAAKHFQRSIVRGVEGFI 73
>02_05_0614 +
30358737-30358923,30359797-30359844,30360590-30360666,
30361517-30361969,30362051-30362602,30362704-30362937
Length = 516
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 18 GALNSGSRLGSARYGHTPSGGNRARSGCQNKVEREYD 128
G+ + G RLG P+GG+ R + K R YD
Sbjct: 12 GSFSGGQRLGGVHLPAVPAGGDDGRRAQEIKRRRRYD 48
>08_01_0072 -
513561-513926,514055-514189,514274-514417,
514505-514744,516325-516636
Length = 398
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +3
Query: 6 HRGGG--ALNSGSRLGSARYGHTPSGG 80
HRGGG A++ R+GSAR G GG
Sbjct: 13 HRGGGGAAVSRSKRMGSARSGRGGGGG 39
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 9 RGGGALNSGSRLGSARYGHTPSGGNRARSGCQNKVE 116
RGGG+ SG R G A T GG R G ++E
Sbjct: 296 RGGGSGESGGRRGGAADEKTDKGGEPERRGKGGELE 331
>04_04_0830 + 28491556-28492103,28492713-28492806,28492968-28493054
Length = 242
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 9 RGGGALNSGSRLGSARYGHTPSGGNRARSGCQNKVERE 122
R GG G LGSAR G G NR +G + + RE
Sbjct: 34 RAGGERLCGVELGSARPGGGTKGRNRGGTGRRREWSRE 71
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 559 KVDLGDFKLPGGILDECPNF-KKRNKKEL*KRSVKRKQGEDIFA 687
++D DF + GG +++ +K K + K+ KRK+G+D +A
Sbjct: 22 EIDEADFGIFGGAVEDLGEIDRKAGKDQKKKKRKKRKRGDDDYA 65
>10_07_0138 + 13325418-13325954
Length = 178
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 11 RWRRSKQWIPARIGQIWSHAKWRKPRAQR 97
RWRRS++W +R + W + WR+ R R
Sbjct: 90 RWRRSRRW-RSRCSRRWRRS-WRRRRCSR 116
>12_02_1177 -
26708215-26708309,26708355-26708392,26708476-26709563,
26709826-26709945,26710018-26710098,26710696-26710812,
26711122-26711904
Length = 773
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 12 GGGALNSGSRLGSARYGHTPSGGNRARSGCQNKVEREYDSKRCTPFLQKQDVPQEG 179
GGGA SG G +R G GG A++ ++K + + K V QEG
Sbjct: 20 GGGAGQSGDG-GGSRGGRRGGGGGEAKAVARSKTTVKQEGCDAAVARSKTTVKQEG 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,247,933
Number of Sequences: 37544
Number of extensions: 493814
Number of successful extensions: 1609
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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