Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I19
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    76   1e-14
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81473-8|CAB03899.2|  418|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81473-4|CAB03891.1|  463|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL031636-1|CAA21046.2|  418|Caenorhabditis elegans Hypothetical ...    28   5.8  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 75.8 bits (178), Expect(2) = 1e-14
 Identities = 57/153 (37%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
 Frame = +1

Query: 265 KNGGTRTVLLKSRKSFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGAVCILLAGRHAGKR 444
           K G  +    K   +  P   +  G       SK V   R  LTPG V I+LAGRH GKR
Sbjct: 31  KKGEKKPKFTKDTSAKLPKLQR-NGTKFALGHSKTVT-LRKTLTPGTVLIVLAGRHKGKR 88

Query: 445 XXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPGGILDECPNFK 621
                          TGP   N  PLRRI Q +VI TS KV++   K+P  I DE   FK
Sbjct: 89  VVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDE--YFK 146

Query: 622 KRNKKEL*KRSVKRKQGEDIFATTKEKYVPSEQ 720
                   ++S  +K G++IFA+ K +Y  SEQ
Sbjct: 147 --------RKSTAQKTGKNIFASGKTEYTVSEQ 171



 Score = 21.8 bits (44), Expect(2) = 1e-14
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 136 GVLRFSKSRMYHKK 177
           GVLRFS SR+  KK
Sbjct: 19  GVLRFSASRLRLKK 32


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +1

Query: 310 FYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGAVCILLAGRHAGKR 444
           FYPT+   + RSHG   +       PN     V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 616 FKKRNKKEL*KRSVKRKQGEDIFATTKEK 702
           +KK  +K+L KR+ + +QGE + A  KEK
Sbjct: 457 YKKHAQKKLAKRAAQNQQGEKLAAEEKEK 485


>Z81473-8|CAB03899.2|  418|Caenorhabditis elegans Hypothetical
           protein Y47H9A.1 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 54  RYGHTPSGGNRARSGCQNKVEREYDSKRCTPFLQKQDVPQEGYI 185
           +Y HT   G+  +      VER  D +    +LQK+   +EG I
Sbjct: 94  KYSHTNKDGSAVKPFIVKNVERHSDEEPYDVYLQKKKRNEEGMI 137


>Z81473-4|CAB03891.1|  463|Caenorhabditis elegans Hypothetical
           protein C17D12.3 protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 54  RYGHTPSGGNRARSGCQNKVEREYDSKRCTPFLQKQDVPQEGYI 185
           +Y HT   G+  +      VER  D +    +LQK+   +EG I
Sbjct: 94  KYSHTNKDGSAVKPFIVKNVERHSDEEPYDVYLQKKKRNEEGMI 137


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 374 VGRDLTSL--PAQCAFCWR-ADTLASVSCSLECC 466
           V R+ T+L   ++C F W  A T A+ +CS  CC
Sbjct: 74  VNRNCTALVPDSKCVFKWAFATTAAATACSCTCC 107


>AL031636-1|CAA21046.2|  418|Caenorhabditis elegans Hypothetical
           protein Y47H9A.1 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 54  RYGHTPSGGNRARSGCQNKVEREYDSKRCTPFLQKQDVPQEGYI 185
           +Y HT   G+  +      VER  D +    +LQK+   +EG I
Sbjct: 94  KYSHTNKDGSAVKPFIVKNVERHSDEEPYDVYLQKKKRNEEGMI 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,655,150
Number of Sequences: 27780
Number of extensions: 381530
Number of successful extensions: 1268
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)