Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I19
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.72 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.95 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 62  SHAKWRKPRAQRVSEQSGTRI*LETVYSVSPKAGCTTR 175
           S  +WRKP+   V E++  R  LE + ++  + G +T+
Sbjct: 33  SKIQWRKPKPAMVEEKTQLRY-LEELNALRTELGASTK 69


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 33  GSRLGSARYGHTPSGGNRARSGCQNK 110
           G   G  + G    GGNR R+G  NK
Sbjct: 81  GKGRGHGKGGSRGRGGNRGRTGFNNK 106


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 197 PTNLYIAFLWYILLLEKRSTPFRVIFSFHFVLT 99
           P+ L +   W    L + +TP RV      VLT
Sbjct: 230 PSGLIVIISWVSFWLNRNATPARVALGVTTVLT 262


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 197 PTNLYIAFLWYILLLEKRSTPFRVIFSFHFVLT 99
           P+ L +   W    L + +TP RV      VLT
Sbjct: 230 PSGLIVIISWVSFWLNRNATPARVALGVTTVLT 262


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 197 PTNLYIAFLWYILLLEKRSTPFRVIFSFHFVLT 99
           P+ L +   W    L + +TP RV      VLT
Sbjct: 169 PSGLIVIISWVSFWLNRNATPARVALGVTTVLT 201


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 558 SRCSN-DIALRNPAQGTRVESKRSSEE*QTTRQHSNEHDTLASVSARQQNAH 406
           SRC+N D    N       +++ SS+   +  Q++N+H+  A  S++  N H
Sbjct: 412 SRCANFDNQDNNHYNHNHNQARHSSK---SDNQNNNQHNDQAHHSSKSNNRH 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,319
Number of Sequences: 438
Number of extensions: 4341
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)