Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I18
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   2.5  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   5.8  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.6  

>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 249 CLLFLEVLLMCCEISMLTCIS 187
           C+ FL   L  CEI+  TCI+
Sbjct: 49  CIYFLHTFLADCEIAKSTCIT 69


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 341 FLSIRWN*NGLREVSSVLAVKW 276
           F  +R+N NG    SSV A+KW
Sbjct: 228 FKYLRFNKNGQLNSSSVTAIKW 249


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 463 NDIHFENYFYLFGNKLVNEINVQSVRNFASIVCL 362
           +D +F     +FG  L+N+IN Q + N  ++V L
Sbjct: 502 DDSYFPREIQMFG--LINDINYQILSNMNNLVLL 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,472
Number of Sequences: 5004
Number of extensions: 31821
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)