Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I18
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0054 - 7816743-7816779,7816843-7816903,7818013-7818460           27   7.5  
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934...    27   7.5  

>11_02_0054 - 7816743-7816779,7816843-7816903,7818013-7818460
          Length = 181

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 195 CISL*CQRSNHQLLVMWKCYCVANADIL 112
           C S  CQ  N Q+L+ W C C A  + +
Sbjct: 140 CTSAICQLGNDQVLLFW-CCCAAGGNAM 166


>05_03_0184 +
           9339939-9340896,9341003-9341083,9341166-9341383,
           9341796-9342019,9342409-9343096
          Length = 722

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 179 HYKEIQVNIEISQHINKTSRNNKH 250
           HY+E++ N EI++   +T R+N H
Sbjct: 697 HYEELKQNYEIARDDYQTGRSNAH 720


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,846,190
Number of Sequences: 37544
Number of extensions: 163279
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)