Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I17
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    27   1.4  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    27   2.5  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    27   2.5  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   7.5  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   9.9  

>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +3

Query: 498 SPPPGFCFDI 527
           SPPPGFC+D+
Sbjct: 130 SPPPGFCYDV 139


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 141 LVRQGRLQFVGGAWS--MNDEAAS-HYQSTIDQFTLGLSKLNETFGECGRPRVGW 296
           +V + R   +   W+   +DE  S H++ + D FT  L  + +++   G P+ G+
Sbjct: 123 IVNRMRFDAIHPEWTNGSDDEYFSNHFEESYDDFTSSLENIKQSYKPPGPPKSGF 177


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 137 MNFIFDSLCLPDPPLPEESCLHVDKPS 57
           +NFI  S+  P PP   ++ L V+KP+
Sbjct: 23  LNFIDSSMLRPTPPQESDNRLAVEKPN 49


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 438 GDDDIGEASDIFTGVLYNTYSPP 506
           G  D+ ++S +FTGVL ++ S P
Sbjct: 434 GSSDLDQSSPLFTGVLSSSDSVP 456


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 162 QFVGGAWSMNDEAASHYQSTIDQFTLGLSKL 254
           Q +   W + DE ++  +S + QFT G S++
Sbjct: 671 QIIKWFWELMDEWSNEKKSRLLQFTTGTSRI 701


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,595
Number of Sequences: 5004
Number of extensions: 54719
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)