Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I17
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937...   177   4e-45
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245...   162   1e-40
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850          108   3e-24
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753...    29   2.5  
06_01_1013 - 7931756-7935109                                           28   5.8  
05_01_0335 + 2652334-2652340,2652459-2652550,2652642-2653362,265...    28   5.8  
08_01_0388 + 3432177-3433154                                           27   7.6  
02_02_0512 + 11092907-11093204,11095454-11095580,11096016-110965...    27   7.6  

>11_05_0014 +
           18392622-18392834,18393064-18393147,18393709-18393797,
           18393889-18394063,18394370-18394489,18394591-18394677,
           18394755-18394826,18395166-18395279,18395387-18395487,
           18395576-18395669,18395794-18395961,18396287-18396352,
           18396475-18396531,18396708-18396927,18397015-18397151,
           18397573-18397641,18397722-18397781,18397927-18397998,
           18398171-18398218,18398376-18398495,18398743-18398808,
           18399341-18399453,18399821-18399905,18400246-18400356,
           18400436-18400531,18401075-18401143,18401235-18401453
          Length = 974

 Score =  177 bits (432), Expect = 4e-45
 Identities = 83/182 (45%), Positives = 113/182 (62%), Gaps = 1/182 (0%)
 Frame = +3

Query: 9   QYILDSVIRELWEDPKRRFIYVETAFFWKWWVRQTEAVKDKVHTLVRQGRLQFVGGAWSM 188
           Q +LDS++  L +D  R+F+YVE AFF +WW +Q++ +KD V  L+  GRL+ + G   M
Sbjct: 76  QNVLDSLVPALLKDENRKFVYVEQAFFQRWWRQQSDMIKDIVKGLISTGRLELINGGMCM 135

Query: 189 NDEAASHYQSTIDQFTLGLSKLNETFGECGRPRVGWQIDPFGHSREFASLLAA-MGYDGL 365
           +DEA  HY   IDQ TLG   + E FG+   PR+GWQIDPFGHS   A LL   +G+D  
Sbjct: 136 HDEATVHYIDMIDQTTLGHRFIKEEFGQI--PRIGWQIDPFGHSAVQAYLLGTEVGFDAF 193

Query: 366 FLGRIDYQDKSARLHNKNMEMLWRGDDDIGEASDIFTGVLYNTYSPPPGFCFDILCDDDP 545
           +  RIDYQD+  R   K +E++WRG    G ++DIF G+    Y PPPG  +  + D  P
Sbjct: 194 YFFRIDYQDRDTRKGTKELEVVWRGSKTFGSSADIFAGIFPKNYEPPPGQFYFEVDDTSP 253

Query: 546 IV 551
           IV
Sbjct: 254 IV 255


>10_01_0232 +
           2456449-2456652,2456814-2456897,2459113-2459201,
           2459245-2459452,2459764-2459883,2460004-2460087,
           2460171-2460242,2460342-2460455,2460852-2460952,
           2461024-2461117,2461265-2461432,2461539-2461616,
           2461908-2461973,2462052-2462108,2462353-2462572,
           2462867-2463003,2465379-2465450,2465530-2465577,
           2465681-2465806,2465982-2466047,2466508-2466620,
           2467348-2467432,2467885-2467980,2468067-2468114,
           2468190-2468258,2468393-2468581
          Length = 935

 Score =  162 bits (394), Expect = 1e-40
 Identities = 83/191 (43%), Positives = 111/191 (58%), Gaps = 12/191 (6%)
 Frame = +3

Query: 18  LDSVIRELWEDPKRRFIYVETAFFWKWWVRQTEAVKDKVHTLVRQGRLQFVG-------- 173
           LDSV+  L  DP R+F++ E AFF +WW  ++  ++  VH LV  G+L+F+         
Sbjct: 76  LDSVVDALILDPARKFVFAEQAFFQRWWAEKSPKIQAIVHKLVDSGQLEFISLRKFGNFK 135

Query: 174 ---GAWSMNDEAASHYQSTIDQFTLGLSKLNETFGECGRPRVGWQIDPFGHSREFASLLA 344
              G W M+DEAA HY   IDQ TLG   + + F +   PR GWQIDPFGHS     LL 
Sbjct: 136 FRNGGWCMHDEAAVHYIDMIDQTTLGHRVIKKQFNKI--PRAGWQIDPFGHSAVQGYLLG 193

Query: 345 A-MGYDGLFLGRIDYQDKSARLHNKNMEMLWRGDDDIGEASDIFTGVLYNTYSPPPGFCF 521
           A +G+D +   RIDYQD++ R  +K +E++WRG    G +S IFT      YSPP GF F
Sbjct: 194 AELGFDSMHFARIDYQDRAKRKGDKGLEVIWRGSRTFGSSSQIFTNAFPVHYSPPDGFGF 253

Query: 522 DILCDDDPIVD 554
           +I  D  P+ D
Sbjct: 254 EIFDDFVPVQD 264


>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score =  108 bits (259), Expect = 3e-24
 Identities = 62/168 (36%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
 Frame = +3

Query: 9   QYILDSVIRELWEDPKRRFIYVETAFFWKWWVRQTEAVKDKVHT-LVRQGRLQFVGGAWS 185
           ++ILD++I  L +D +R+F++ E ++  +WW R     K +  T LVR G+L+ V G W 
Sbjct: 193 RHILDTIIESLSKDSRRKFLWEEMSYLERWW-RDAPRKKQEAFTKLVRDGQLEIVSGGWV 251

Query: 186 MNDEAASHYQSTIDQFTLGLSKLNETFGECGRPRVGWQIDPFGHSREFASLLAAMGYDGL 365
           MNDE              G   LN+T G    P+  W IDPFG+S   A LL  MG+  +
Sbjct: 252 MNDEMME-----------GNMWLNDTIGVV--PKNSWSIDPFGYSATMAYLLRRMGFHNM 298

Query: 366 FLGRIDYQDKSARLHNKNMEMLWRGDDDIGEASDIFTGVL-YNTYSPP 506
            + R  Y+ K     NKN+E LWR + DI E +DIF  ++ + +Y  P
Sbjct: 299 LIQRTHYELKKELAMNKNLEYLWRQNWDIDETTDIFVHMMPFYSYDIP 346


>05_03_0030 +
           7529814-7530257,7530409-7530462,7531605-7532793,
           7532861-7533522
          Length = 782

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -3

Query: 289 TRGLPHSPKVSFNLLSPRVNWSMVL**WDAASSFIDHAPPTN 164
           T GLP+SPK  + LLS  VN S +L     +SS+I  +   N
Sbjct: 343 TLGLPYSPKPEYPLLSSIVNLSSLL----PSSSYIGFSASVN 380


>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 29   YTGIMGRSKKKVYLRGDSFLLEVVGQANR 115
            +TG++G++   V+ RG   + +V+G +NR
Sbjct: 1034 WTGVLGQAPGSVWRRGGDTVAQVMGTSNR 1062


>05_01_0335 +
           2652334-2652340,2652459-2652550,2652642-2653362,
           2653456-2653533,2653658-2653684,2653871-2653938,
           2654089-2654174,2654251-2654333,2654478-2654620,
           2654709-2654810,2654906-2655199,2655282-2655404,
           2655733-2656119
          Length = 736

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -2

Query: 545 RIVVAQYIETESRRRRVCVIQNSSEYIGCFSDII 444
           ++  AQ + T+ RR   C+I ++ +Y+  F  ++
Sbjct: 526 QLAAAQRMNTDIRRAIFCIIMSAEDYVDAFEKLL 559


>08_01_0388 + 3432177-3433154
          Length = 325

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 349 IAARRDANSRE*PNGSICQPTRGLPHS 269
           I +R +ANS      S  QPTR LPH+
Sbjct: 17  IHSRSNANSNGATTASSSQPTRSLPHT 43


>02_02_0512 +
           11092907-11093204,11095454-11095580,11096016-11096560,
           11096679-11096890
          Length = 393

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 255 NETFGE-CGRPRVGWQIDPFGHSREFAS-LLAAMGYDG 362
           NE FG  CG  R  W  D  GH+ E A+ L AA  YDG
Sbjct: 338 NEQFGAPCGNRREYWFWD-VGHTTEKAAKLAAAAFYDG 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,325,357
Number of Sequences: 37544
Number of extensions: 382132
Number of successful extensions: 968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)