Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I17
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...   214   4e-56
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr...   101   3e-22
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr...   101   3e-22
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    99   2e-21
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    27   6.9  
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score =  214 bits (522), Expect = 4e-56
 Identities = 90/183 (49%), Positives = 123/183 (67%), Gaps = 1/183 (0%)
 Frame = +3

Query: 9   QYILDSVIRELWEDPKRRFIYVETAFFWKWWVRQTEAVKDKVHTLVRQGRLQFVGGAWSM 188
           QYI ++VI EL ++P RRF + ET F W+W+   ++  + ++  LV+ G+++ +GG W  
Sbjct: 71  QYIYNTVIDELLKNPDRRFSFAETGFLWRWYTSNSDFDRHQLQKLVKNGQIEIIGGGWVQ 130

Query: 189 NDEAASHYQSTIDQFTLGLSKLNETFGECGRPRVGWQIDPFGHSREFASLLAAMGYDGLF 368
           NDEA SHY   IDQ TLGL +L + FGECG+P  GWQIDPFGHSRE A++   MGY  ++
Sbjct: 131 NDEATSHYVDIIDQMTLGLQRLEQIFGECGKPVTGWQIDPFGHSREMANIYREMGYSSVY 190

Query: 369 LGRIDYQDKSARLHNKNMEMLWRGDDDIGEASDIFTGVLYN-TYSPPPGFCFDILCDDDP 545
             RI Y +K  RL NK +E +W   DDI + + +FTG  +N  Y PP GFC+D LC DDP
Sbjct: 191 FARIHYLEKQIRLKNKTLEFMWNTSDDITD-NKLFTGAFFNDNYGPPEGFCWDSLCGDDP 249

Query: 546 IVD 554
           I+D
Sbjct: 250 IMD 252


>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical
           protein F58H1.1b protein.
          Length = 1145

 Score =  101 bits (243), Expect = 3e-22
 Identities = 50/141 (35%), Positives = 68/141 (48%)
 Frame = +3

Query: 15  ILDSVIRELWEDPKRRFIYVETAFFWKWWVRQTEAVKDKVHTLVRQGRLQFVGGAWSMND 194
           ILD + + L E  + RFIY E +FF  WW  Q + +K KV   +  G+ + V G W M D
Sbjct: 210 ILDGMAKHLAEKDEMRFIYAEISFFETWWRDQADEIKKKVKGYLEAGKFEIVTGGWVMTD 269

Query: 195 EAASHYQSTIDQFTLGLSKLNETFGECGRPRVGWQIDPFGHSREFASLLAAMGYDGLFLG 374
           EA +HY S I +   G   +    G+   P+  W IDPFG S     LL +       + 
Sbjct: 270 EANAHYHSMITELFEGHEWIQNHLGKSAIPQSHWSIDPFGLSPSMPHLLTSANITNAVIQ 329

Query: 375 RIDYQDKSARLHNKNMEMLWR 437
           R+ Y  K      KN+E  WR
Sbjct: 330 RVHYSVKRELALKKNLEFYWR 350


>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical
           protein F58H1.1a protein.
          Length = 1143

 Score =  101 bits (243), Expect = 3e-22
 Identities = 50/141 (35%), Positives = 68/141 (48%)
 Frame = +3

Query: 15  ILDSVIRELWEDPKRRFIYVETAFFWKWWVRQTEAVKDKVHTLVRQGRLQFVGGAWSMND 194
           ILD + + L E  + RFIY E +FF  WW  Q + +K KV   +  G+ + V G W M D
Sbjct: 208 ILDGMAKHLAEKDEMRFIYAEISFFETWWRDQADEIKKKVKGYLEAGKFEIVTGGWVMTD 267

Query: 195 EAASHYQSTIDQFTLGLSKLNETFGECGRPRVGWQIDPFGHSREFASLLAAMGYDGLFLG 374
           EA +HY S I +   G   +    G+   P+  W IDPFG S     LL +       + 
Sbjct: 268 EANAHYHSMITELFEGHEWIQNHLGKSAIPQSHWSIDPFGLSPSMPHLLTSANITNAVIQ 327

Query: 375 RIDYQDKSARLHNKNMEMLWR 437
           R+ Y  K      KN+E  WR
Sbjct: 328 RVHYSVKRELALKKNLEFYWR 348


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 51/161 (31%), Positives = 81/161 (50%)
 Frame = +3

Query: 15  ILDSVIRELWEDPKRRFIYVETAFFWKWWVRQTEAVKDKVHTLVRQGRLQFVGGAWSMND 194
           ILD++ + + ++ K RF++ E  FF +WW  Q E VK+ V  LV +GRL+   G+W M D
Sbjct: 165 ILDNMHQFMMKNEKMRFMWAEFVFFERWWSLQNEQVKEDVKKLVTEGRLELATGSWVMTD 224

Query: 195 EAASHYQSTIDQFTLGLSKLNETFGECGRPRVGWQIDPFGHSREFASLLAAMGYDGLFLG 374
           EA  ++  ++D    G   +++ FG   +P+  W  DPFG+S     L    G     + 
Sbjct: 225 EANPYFPVSVDNIVEGFQFIHKNFGI--KPQTMWSNDPFGYSNSVPYLFKKSGVHRTVIN 282

Query: 375 RIDYQDKSARLHNKNMEMLWRGDDDIGEASDIFTGVLYNTY 497
           RI ++ K      K +   WR   D     D+ T +L  T+
Sbjct: 283 RIHHKLKQTLQSQKAIPFKWRQYFDATGEDDVLTQILPYTH 323


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 414 KNMEMLWRGDDDIGEASDIFTGVL 485
           KN  +LWR  ++IGE  +I   V+
Sbjct: 434 KNTNLLWRNSEEIGENGEILYNVV 457


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 133 TLSLTASVCLTHHFQKKAVST*INLLFGSSHNSRITESSIYC 8
           TL +T  VCL  +  +  +S  +NL      N  I   S+YC
Sbjct: 144 TLPVTTGVCLPSNCHENQMSKLLNLAKEYLFNETIHVDSVYC 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,180,639
Number of Sequences: 27780
Number of extensions: 304219
Number of successful extensions: 820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)