Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_I16
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 105 6e-24
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 39 6e-04
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 33 0.024
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 28 1.2
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 27 2.0
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 4.7
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 4.7
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 25 6.2
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 25 6.2
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 25 6.2
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom... 25 8.3
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 8.3
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 25 8.3
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 25 8.3
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 105 bits (251), Expect = 6e-24
Identities = 59/193 (30%), Positives = 103/193 (53%), Gaps = 5/193 (2%)
Frame = +1
Query: 22 YIPPHLRNK--DSTSDKDLVQLKRQVKSVLNKLTGTNLHWACTSIERLYSGNSRNSVNSA 195
Y+PP LR K +D ++L+R+++ LNKL+ N+ IE LY NSR+SV S
Sbjct: 240 YVPPSLRKKLGGDKESEDALRLRRKLQGSLNKLSIANISSIIKEIEVLYMENSRHSVTST 299
Query: 196 LMQVWTEGTVSVSVTPDRMVAEHAALLAVIHANVGAEIGAHFLQELAKRFDVTMQT--QQ 369
+ + + + D++ +AAL ++ VG + GAH LQ L +RF ++ ++
Sbjct: 300 ITNLLLQTVMGRESMLDQLAIVYAALATALYRIVGNDFGAHLLQTLVERFLQLYKSKEKE 359
Query: 370 PVED-KRLDNLVSCLAHLYSFKIYHATLLYDILGRLLEEITEKTIECVTVALRVAGGVLR 546
P+ K NL+ LY+F++ L+YD++ L +TE +E + + GG LR
Sbjct: 360 PLSSHKETSNLIVFFVELYNFQLVSCVLVYDLIRLFLRSLTELNVEMLLKIVLNCGGQLR 419
Query: 547 KEEPAALKSLVQD 585
++P +L+ +V +
Sbjct: 420 SDDPTSLQDIVTE 432
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 38.7 bits (86), Expect = 6e-04
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 1/169 (0%)
Frame = +1
Query: 79 LKRQVKSVLNKLTGTNLHWACTSIERLYSGNSRNSVNSALMQVWTEGTVSVSVTPDRMVA 258
LK+ + ++NK+ +N+ I L+ N + S+ TP
Sbjct: 123 LKKSINGLINKVNKSNIR---DIIPELFQENIIRGRALYCRSIMKAQAASLPFTPI---- 175
Query: 259 EHAALLAVIHANVGAEIGAHFLQELAKRFDVTMQTQQPVEDKRLD-NLVSCLAHLYSFKI 435
+AA+ AVI+ +IG L L +F + Q DK + + S +AHL + KI
Sbjct: 176 -YAAMTAVINTKF-PQIGELLLTRLIVQFRKSFQRN----DKSMCISSSSFIAHLINQKI 229
Query: 436 YHATLLYDILGRLLEEITEKTIECVTVALRVAGGVLRKEEPAALKSLVQ 582
H + IL LLE T +IE + LR G L + A + +
Sbjct: 230 AHEIVGLQILAVLLERPTNDSIEIAVMLLREIGAYLAEVSTRAYNGVFE 278
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 33.5 bits (73), Expect = 0.024
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 224 TVPSVHTCIKALFTEFLLLPEYNLSIDV--QAQWRFVPVNLFKTLLTCLFN 78
T+PSV T + ++LLPE ++ + + + F P LF L CL N
Sbjct: 973 TIPSVLTAQTRILLSYMLLPECDIDVQLLKKRNSLFFPSTLFANYLDCLIN 1023
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 418 LYSFKIYHATLLYDILGRLLEEITEKTIECVTVALRVAG-GVLRKEEPAALKSLVQ 582
LY F + L+ I R L + + + L+ G GV K +PA L +L+Q
Sbjct: 82 LYLFSYILPSKLFTIFSRSLVNRSAAVVHVICWILQFIGHGVFEKRKPALLDNLIQ 137
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 1 ARGEKGTYIPPHLR 42
A GEKG YI PHLR
Sbjct: 169 ALGEKGRYIAPHLR 182
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/70 (22%), Positives = 36/70 (51%)
Frame = +1
Query: 37 LRNKDSTSDKDLVQLKRQVKSVLNKLTGTNLHWACTSIERLYSGNSRNSVNSALMQVWTE 216
L+N D + QLK + + + + T + + +SIE+ + ++ +S+LM++ T+
Sbjct: 1029 LKNYDMIIVEQTSQLKEKNRIIASLTKATKILNSASSIEQSRNSEEKSRRDSSLMEMRTQ 1088
Query: 217 GTVSVSVTPD 246
+ V + D
Sbjct: 1089 KEMLVLLMND 1098
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 88 QVKSVLNKLTGTNLHWACT 144
QV SV++ T+LHWAC+
Sbjct: 239 QVNSVIDDDGHTSLHWACS 257
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +1
Query: 82 KRQVKSVLNKLTGTNLHWACTSIERLYSGNSRNSVNSALMQVWTEGTVSVSV 237
K + S+L TG++ ++ + R ++ S+N +S + +W G +V
Sbjct: 69 KGTLPSILRSTTGSSCYFYFLNWLRHFAPQSKNIASSHIQNLWMGGFARAAV 120
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 6.2
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Frame = +1
Query: 187 NSALMQVWTEGTVSVSVTPDRMVAEHAALLAVIHANVGAEIGAHFLQELAKRFDVTM--- 357
N L+ V E + D + AL A +++ + L E K +
Sbjct: 104 NDQLLNVILEDQFATEKDSDNGAVNYGALEAALNSLMSQVTSKEILYEPLKDLEANYPKF 163
Query: 358 -----QTQQPVEDKRLDNLVSCLAHLYSFKIYHATLLYDILGRLLEEITEKTI 501
+T++ +++ + C+ ++ Y A DI+ +L+EEI EK +
Sbjct: 164 LKNAKETEKQGFEEQYQKIQKCI-QIFESPEYDARKDADIISKLVEEIQEKPL 215
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 6.2
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -3
Query: 245 SGVTETDTVPSVHTCIKALFTEFLLLPEYNLSIDVQAQWRFVPVNLFKTLLTCLFNCTKS 66
S +E+D V + H C + ++ +Y I +Q QW + +N T L+ C +
Sbjct: 390 SPFSESDPVITHHICDRPHISQ-----KYEGRIYIQPQWVYDSINKGILERTDLYACGAT 444
Query: 65 LSEVESLFLKCG 30
L S F+K G
Sbjct: 445 LPPHLSPFVKVG 456
>SPAC12B10.15c |||ribonuclease H2 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/70 (20%), Positives = 26/70 (37%)
Frame = -3
Query: 281 TANSAACSATILSGVTETDTVPSVHTCIKALFTEFLLLPEYNLSIDVQAQWRFVPVNLFK 102
T C + + T +P CI + F + +L N+ + QW+ + +
Sbjct: 75 TGQVVLCDDGLENDETSEKEIPESTWCINSTFEKVMLWNRDNMRSSEKDQWKRGVLEWIQ 134
Query: 101 TLLTCLFNCT 72
FNC+
Sbjct: 135 FASKVKFNCS 144
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 439 HATLLYDILGRLLEEITEKTIECVTVALRVAGGVL 543
H LY++LGR++ + K + A + GG++
Sbjct: 35 HPDELYNLLGRVVPYLKSKNWDTRVAAAKAIGGIV 69
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 513 RHALYRLLRDLFQKTAEDIVQECGV 439
RH L + + K AE ++Q+CGV
Sbjct: 16 RHLFLWPLAETYFKNAEKVLQDCGV 40
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 99 TFDLPFQLH*IFIRSRIFVSQMWRYICSF 13
TF F L RS + V +W+YIC F
Sbjct: 285 TFGAIFVLEFFGRRSPLIVGGIWQYICFF 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.131 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,129
Number of Sequences: 5004
Number of extensions: 48623
Number of successful extensions: 163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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