Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_I16
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0335 + 2652334-2652340,2652459-2652550,2652642-2653362,265... 62 2e-10
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 32 0.30
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 31 0.52
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 31 0.91
10_08_0446 - 17993511-17993762,17993947-17994060,17995009-17995011 30 1.6
05_03_0245 + 10890555-10890962 29 2.8
05_03_0244 + 10857139-10857516 29 2.8
11_01_0590 + 4684652-4685296,4687327-4687466,4688222-4688768 28 6.4
11_01_0577 - 4611820-4612509 28 6.4
06_02_0152 - 12316242-12316248,12316634-12316800,12317689-123178... 28 6.4
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 27 8.5
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 27 8.5
03_05_0222 + 22082863-22082938,22083261-22083333,22083451-220834... 27 8.5
>05_01_0335 +
2652334-2652340,2652459-2652550,2652642-2653362,
2653456-2653533,2653658-2653684,2653871-2653938,
2654089-2654174,2654251-2654333,2654478-2654620,
2654709-2654810,2654906-2655199,2655282-2655404,
2655733-2656119
Length = 736
Score = 62.5 bits (145), Expect = 2e-10
Identities = 52/193 (26%), Positives = 87/193 (45%)
Frame = +1
Query: 13 KGTYIPPHLRNKDSTSDKDLVQLKRQVKSVLNKLTGTNLHWACTSIERLYSGNSRNSVNS 192
K Y+PP LR ++ +++ Q++R+V+ +LN+L+ +N+ I L+S S +S
Sbjct: 246 KAKYVPPSLRATSNSESEEIAQIRRRVRGLLNRLSESNVESITQEIAALFSVLSISSKKY 305
Query: 193 ALMQVWTEGTVSVSVTPDRMVAEHAALLAVIHANVGAEIGAHFLQELAKRFDVTMQTQQP 372
L G S+ VG + A L LAK F+ +
Sbjct: 306 RL-----PGMASL---------------------VGIDFSAKILASLAKLFEDEYSKEDG 339
Query: 373 VEDKRLDNLVSCLAHLYSFKIYHATLLYDILGRLLEEITEKTIECVTVALRVAGGVLRKE 552
+ L NL L +L F + + L+YD+L L + +TE + V L+ G LR +
Sbjct: 340 LS---LRNLTLLLCYLCIFDVISSDLVYDLLSVLSKRLTELDVSTVLTILQCCGMKLRGD 396
Query: 553 EPAALKSLVQDTQ 591
+P+A+K V Q
Sbjct: 397 DPSAMKDFVLSIQ 409
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 32.3 bits (70), Expect = 0.30
Identities = 35/169 (20%), Positives = 73/169 (43%), Gaps = 1/169 (0%)
Frame = +1
Query: 79 LKRQVKSVLNKLTGTNLHWACTSIERLYSGNSRNSVNSALMQVWTEGTVSVSVTPDRMVA 258
LK+ + ++NK+ TN+ + L++ N ++ + + +
Sbjct: 240 LKKSINGLVNKVNATNIK---NIVPELFAENLVRGRG-----LFCQSCIKSQMASPGFTD 291
Query: 259 EHAALLAVIHANVGAEIGAHFLQELAKRFDVTMQTQQPVEDK-RLDNLVSCLAHLYSFKI 435
AAL+AV++ EIG + L R + ++ DK +L +AHL + +
Sbjct: 292 VFAALVAVVNTKF-PEIG----RLLLVRVVLQLKRAYKRNDKPQLLAATKFIAHLVNQVV 346
Query: 436 YHATLLYDILGRLLEEITEKTIECVTVALRVAGGVLRKEEPAALKSLVQ 582
H + ++L LLE T+ ++E ++ G +L+ P L ++ +
Sbjct: 347 AHELVALELLTVLLENPTDDSVEVAVGFVKECGAMLQDLSPQGLHAIFE 395
>01_01_0911 -
7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 31.5 bits (68), Expect = 0.52
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 304 EIGAHFLQELAKRFDVTMQTQQPVEDKRLDNLVSCLAHLYSFKIYHATLLYDILGRLLEE 483
++ L ELA R D +QT R+D+ V CL L+ + A L +L E+
Sbjct: 621 QVAVFLLAELASRDDAVVQTLT-----RVDSDVDCLVALFKKGLVEAVSLIHLLSPSPEQ 675
Query: 484 ITEKTI-ECVTVALRVAGG 537
+ E + + + +R GG
Sbjct: 676 LVEMDMADALVATIRRGGG 694
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 30.7 bits (66), Expect = 0.91
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +1
Query: 1 ARGEKGTYIPPHLRNKDSTS 60
AR ++ +Y+PPHLRN+ ++S
Sbjct: 29 ARPDRSSYVPPHLRNRGASS 48
>10_08_0446 - 17993511-17993762,17993947-17994060,17995009-17995011
Length = 122
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 127 LHWACTSIERLYSGNSRNSVNSALMQVWT 213
LHW C + ERL R V A + WT
Sbjct: 62 LHWLCDTRERLVESQRRGFVTIATLVAWT 90
>05_03_0245 + 10890555-10890962
Length = 135
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Frame = +3
Query: 189 QCLDAGVDGRHCVGFRYTG*DGCRACC-------TVSRD---SCECRC*NWCTF 320
+C+D G G HC G G R+CC RD SC +C N CT+
Sbjct: 76 RCVDTGASGEHCGGCNKACKHG-RSCCGGRCVDLLSDRDNCGSCSNQCSNKCTY 128
>05_03_0244 + 10857139-10857516
Length = 125
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Frame = +3
Query: 189 QCLDAGVDGRHCVGFRYTG*DGCRACC-------TVSRD---SCECRC*NWCTF 320
+C+D G G HC G G R+CC RD SC +C N CT+
Sbjct: 67 RCVDTGASGEHCGGCNKACKHG-RSCCGGRCVDLLSDRDNCGSCSNQCSNKCTY 119
>11_01_0590 + 4684652-4685296,4687327-4687466,4688222-4688768
Length = 443
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 89 CLFNCTKSLSEVESLFLKCGGIYVPFSP 6
CL +C K++ EV+++ L CG Y+ P
Sbjct: 122 CLLSCNKTIGEVDAI-LTCGHTYMEDRP 148
>11_01_0577 - 4611820-4612509
Length = 229
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 89 CLFNCTKSLSEVESLFLKCGGIYVPFSP 6
CL +C K++ EV+++ L CG Y+ P
Sbjct: 122 CLLSCNKTIGEVDAI-LTCGHTYMEDRP 148
>06_02_0152 -
12316242-12316248,12316634-12316800,12317689-12317800,
12317930-12317999,12318535-12318535,12318791-12319144
Length = 236
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 209 HTCIKALFTEFLLLPEYNLSIDVQAQWRFVPVNLFKTLLTCLFNCTKSLS 60
++CI A T LLLP Y +ID + R VP + + + + + S
Sbjct: 151 YSCIMADITNKLLLPNYRRTIDDKLFQRKVPGGIMRGFFLMVLSSRRHFS 200
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 424 YINALNRTPDYLISCLQRAVEFAS*RRNVSPTLARNVHQFQHRH 293
Y+NA+ +L+ L AV RRN+ L + + Q QH +
Sbjct: 239 YLNAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVIQQEQHSY 282
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 424 YINALNRTPDYLISCLQRAVEFAS*RRNVSPTLARNVHQFQHRH 293
Y+NA+ +L+ L AV RRN+ L + + Q QH +
Sbjct: 215 YLNAIQTNAPHLLRYLATAVVVNKRRRNMLKELIKVIQQEQHSY 258
>03_05_0222 +
22082863-22082938,22083261-22083333,22083451-22083496,
22083639-22083753,22083847-22083926,22084022-22084621,
22084718-22084822,22084916-22085248
Length = 475
Score = 27.5 bits (58), Expect = 8.5
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +1
Query: 7 GEKGTYIPPHLRNKD--STSDKDLVQLKRQVK-SVLNKLTGTNLHWACTSIE-RLYSGNS 174
G YIP R+ D ++SD ++++L + +L++++ C + +++ N+
Sbjct: 133 GADSRYIPSRRRSVDVAASSDHNVIELTGTDRPGLLSEVSAVLASLKCNVVSAEIWTHNT 192
Query: 175 RNSVNSALMQVWTEGTVSVSVTPDRM 252
R + A+M+V EGT S DR+
Sbjct: 193 RAA---AVMRVTDEGTGSAVTDADRL 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,889,072
Number of Sequences: 37544
Number of extensions: 326249
Number of successful extensions: 947
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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