Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_I15
(536 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 33 0.020
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 33 0.036
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 30 0.25
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 29 0.58
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 1.3
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.3
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.3
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 27 2.3
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 27 2.3
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 26 3.1
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 3.1
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 26 4.1
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 4.1
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|... 25 7.2
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 7.2
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||... 25 7.2
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.2
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 25 7.2
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 7.2
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|... 25 7.2
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 9.5
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 9.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 9.5
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 33.5 bits (73), Expect = 0.020
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +1
Query: 70 PQNSGGPQGANFTAFGSYGPKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYC 249
P S G AN + SY NN + Y N Y N NN YG N
Sbjct: 31 PSYSVGGTTANSYSSNSYNDNNNSNSTYGSSNN--YGNYGSSNNYGSYGASNTYGSNG-- 86
Query: 250 AGMDQNGMGMSQANGSGGYN 309
+ + G + +NG GY+
Sbjct: 87 SSNNYGNYGATNSNGDAGYS 106
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 32.7 bits (71), Expect = 0.036
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = +1
Query: 49 SQMPRMLPQNSGGPQGANFTAFGSYGPKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNM 228
SQ P N GG + + G YG R+NNY Y+NG N +GQ
Sbjct: 61 SQTPSEFSSNYGGRR--EYNRGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQWRD 118
Query: 229 G 231
G
Sbjct: 119 G 119
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 29.9 bits (64), Expect = 0.25
Identities = 22/86 (25%), Positives = 37/86 (43%)
Frame = +1
Query: 22 SGGHDVPHGSQMPRMLPQNSGGPQGANFTAFGSYGPKNNRRNNYSDEPNEHYNNGPRKNN 201
SG ++ + + Q+S QG ++F + N+ + NY++ N++Y N NN
Sbjct: 571 SGNYNNNNSGNNNQQHQQSSSSLQGLA-SSFLNSSSGNSNKQNYNNNNNQNYGN---NNN 626
Query: 202 AEYYGQQNMGPGRPYCAGMDQNGMGM 279
Y N G G Q G G+
Sbjct: 627 QNYNNNNNSSQG-----GNSQGGSGL 647
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 28.7 bits (61), Expect = 0.58
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Frame = +1
Query: 127 PKNNRRNNYSDEPNEHYNNGPRKNNAEYYGQQNMGPGRPYCAGMDQNGMGMSQANGSGGY 306
P N R N + P G RK + Y N GPG+ + A N + S SGG
Sbjct: 18 PANKRPKN-EEYPEIPGYLGNRKPS--YTQNPNSGPGKLHYASPRPNNVSSSVGVASGG- 73
Query: 307 NDRQRNHRL*TTEV-CSIQTNPNSYSHTT*QLDMSPTSCF 423
DRQ +L + C IQ + +T D S + F
Sbjct: 74 -DRQEADQLQDALISCGIQLKEEELNLSTSFYDPSSLNTF 112
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 27.5 bits (58), Expect = 1.3
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Frame = +1
Query: 112 FGSYGPKNNRRNNYSD---------EPNEHYNN-GPRKNNAEYYGQQNMGPGRPYCAGMD 261
FG++ + +R N+ S+ + E Y G KN + ++N GP Y +G+D
Sbjct: 317 FGNFAKERHRENDVSELYSKTKRTSKIRELYKEIGYDKNEFIHELRENEGPSVLYDSGLD 376
Query: 262 QNGMGMSQA 288
QNG A
Sbjct: 377 QNGTNYDDA 385
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 406 SPTSCFNCLFLQILKLCNNLQLL 474
SP CF CL+ +++LC N L
Sbjct: 447 SPELCFLCLYFFLIRLCLNRPFL 469
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +1
Query: 25 GGHDVPHGSQMPRM----LPQN-SGGPQGANFTAFGSYGPKNNRRNNYSDEPNEHYNNGP 189
G H + S+ P +PQ S GP N SY P +N + +S PN N+GP
Sbjct: 335 GNHQPSYTSEQPMYSTASVPQQISNGPTAVNGLPMNSYTPHSN--HLHSPSPNS--NSGP 390
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 467 CKLLHSFNICKNRQLKQEVG 408
CKL HSFN +N LK+ VG
Sbjct: 8 CKLKHSFNGLRNVALKRLVG 27
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 491 ISWQPCKSCKLLHSFNICKNRQLKQEV 411
I Q C S KLL + N+C +Q+KQ+V
Sbjct: 289 IPTQSCFSEKLLKAANLCVVQQVKQKV 315
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 238 RPYCAGMDQNGMGMSQANGSGGYNDRQRNHR 330
RP A DQ + QA G GY++R N+R
Sbjct: 427 RPLTASADQV-LAAQQAKGQEGYHNRPNNNR 456
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 64 MLPQNSGGPQGANFTAFGSYGPKNNRRNNYSDEP---NEHYNNGPRKN 198
++PQ+S G N +FG YG ++ S +P N + G KN
Sbjct: 110 VVPQSSKTKHGRNSVSFGKYGNAGPFNSDNSSKPLILNNGSSGGTPKN 157
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 133 NNRRNNYSDEPNEHYNNGPRKNNAE 207
++RRN+Y + N+H P K+N +
Sbjct: 2 SSRRNDYHYDGNDHQYRSPLKSNVD 26
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 214 GQQNMGPGRPYCAGMDQNGMGMSQANGSGGYNDRQRNHRL 333
G Q+ G + Q +G N S G+ND + NH L
Sbjct: 383 GSQDKAYGGVVQSNSRQPKVGFHVNNSSSGHNDNEGNHSL 422
>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 160 EPNEHYNNGPRKNNAEYYGQQNMGPGRPYCA-GMDQNGMG-MSQANGSGGYND 312
+ + +YN G +K +A+YY ++ C G + + G + N GY D
Sbjct: 202 DEDSYYNWGGKKTSAQYYVNKSGRSAEDVCVWGNEGDDYGNWAPMNFGSGYTD 254
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 244 TADRDPYFVDHNIPHYSYVD 185
T + PYFVDHN ++VD
Sbjct: 299 TPEGRPYFVDHNTRTTTWVD 318
>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
3|||Manual
Length = 264
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 79 SGGPQGANFTAFGSYGPKNNRRNNYSDEPNEHYNNGPRKN 198
SG +T+F + P+N+ + EP E+Y+ P+ +
Sbjct: 191 SGSQTTTRYTSFPKFNPENSVTSLDLVEPPENYSWAPQSD 230
>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 262 GPCRHSTADRDPYFVDHNIPHYSYVDHYCNVR 167
GP ST+ F H+ Y YV +C +R
Sbjct: 20 GPASSSTSHSSTIFCVHHRVRYIYVPRHCLLR 51
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 275 PIPFWSMPAQYGRPGP 228
P+P W ++Y RPGP
Sbjct: 31 PLPGWDPNSEYFRPGP 46
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.0 bits (52), Expect = 7.2
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Frame = +1
Query: 37 VPHGSQMPRMLPQNSGGPQ---GANFTAFGSYGPKNNRRNNYSDEPNEHYNNGPRKNNAE 207
+P + PR P+N+ + G GP++ RNN S + P NN
Sbjct: 508 MPMNMRGPRGAPRNNSSGDLHIQSGMPMNGRNGPRDTSRNNSSSDLYAQSGMHPNMNNGH 567
Query: 208 YYGQQNMGPGRPYC-AGMDQNGMG---MSQANGSGGYN 309
+N + GM N G S+ N S +N
Sbjct: 568 RGAPRNNSSNDLHAHGGMPVNMRGPRNTSRNNSSSEFN 605
>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 100 NFTAFGSYGPKNNRRNNYSDEPNEHYNNGPR 192
NFTA S PK R +P Y GPR
Sbjct: 28 NFTASPSSQPKPQERPFQMKKPRAPYGMGPR 58
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = +1
Query: 22 SGGHDVPHGSQMPRMLPQNSGGPQGANFTAFGSYGPKNNRRNNYSDEPNEHYNN 183
S + V + + P P NSG A G Y N ++ + P Y N
Sbjct: 912 SNANKVNNANSQPAGFPFNSGASTNAGSNGLGGYNAYN---QSFINRPGGWYGN 962
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 2 HEAAVWVLAVTTYPTGAKCRACSHKIAVDLRAQT 103
+E WVL +T Y T A HKI LR ++
Sbjct: 382 NENESWVLNITPYLTAFIDEAHIHKIVEQLRTRS 415
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 151 YSDEPNEHYNNGPRKNNAEYY 213
Y DE NE G K+N EY+
Sbjct: 931 YIDESNERVVKGKSKDNFEYF 951
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,323
Number of Sequences: 5004
Number of extensions: 53408
Number of successful extensions: 167
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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