Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I10
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    26   3.5  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.7  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    26   4.7  
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    25   6.2  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   8.1  

>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 468 FEVGPEIINCENINDIKVQLDSELENAL 551
           F++ P++    NI DI+ Q+ S  E  L
Sbjct: 16  FQIAPDVKTISNIQDIRAQIQSFREKEL 43


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 111 VFLEKTSKGIKQYNIRPIDPWFISSLDVLADEDMRLLFH 227
           +FLE+ ++ +K+Y  + ++P   +   VL+D  M LL H
Sbjct: 3   LFLEEHAEYLKRYLEQALEPISDADASVLSDYAMALLRH 41


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 287 VNTKIKDFLVLQSGHGHIIKVKQQTHILVSQD 192
           +NT   DFL +Q     ++  K+Q  +++SQ+
Sbjct: 521 INTNHPDFLGVQGAMAVVLSRKEQNRLMLSQE 552


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 58  NDPSQKMLLTNVRKNIIL 5
           N P+ K LLTN R NI++
Sbjct: 123 NTPASKRLLTNERSNILI 140


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -2

Query: 193 TSKDDMNQGSMGRILYCLMPLLVFSRNTFVD*PKQSKSVMSHGTNNDPSQKMLLTNVRKN 14
           TSK  +N      +L   +P    S+ +F D  +++        +NDP+ +ML  N +  
Sbjct: 320 TSKVVLNLNDPKLLLQPQLPKKEDSQRSFADTHQRNSLAWKFNISNDPAYEMLKQNHQSK 379

Query: 13  I 11
           +
Sbjct: 380 V 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,634
Number of Sequences: 5004
Number of extensions: 51891
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)