Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I08
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical pr...    26   9.8  
Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical pr...    26   9.8  
AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm rece...    26   9.8  

>Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical
           protein R08D7.6c protein.
          Length = 856

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 268 SNHQIKSSKLPMIVSEVT*PQNFDHEYL 351
           S H  K  ++  ++SE   P +FDH YL
Sbjct: 536 SAHLRKQERIKTMISEGYNPMSFDHRYL 563


>Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical
           protein R08D7.6b protein.
          Length = 734

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 268 SNHQIKSSKLPMIVSEVT*PQNFDHEYL 351
           S H  K  ++  ++SE   P +FDH YL
Sbjct: 539 SAHLRKQERIKTMISEGYNPMSFDHRYL 566


>Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical
           protein R08D7.6a protein.
          Length = 859

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 268 SNHQIKSSKLPMIVSEVT*PQNFDHEYL 351
           S H  K  ++  ++SE   P +FDH YL
Sbjct: 539 SAHLRKQERIKTMISEGYNPMSFDHRYL 566


>AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 69 protein.
          Length = 336

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 68  RWG-YIHLFPTLSYVHF*SFIIIHYCYRKKKETKIQTAFLQYITQASER 211
           RW   I+L   +S + F  FIII  CY+     KI+ A      Q   R
Sbjct: 193 RWNTVIYLIIGISSISFHYFIIIVCCYKMHISMKIELAKFSVKNQTLHR 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,212,146
Number of Sequences: 27780
Number of extensions: 162773
Number of successful extensions: 319
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)