Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_I07
(453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 28 0.58
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 27 1.0
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 26 3.1
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 4.1
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb... 25 4.1
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 5.4
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 7.2
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 25 7.2
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 7.2
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 24 9.5
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 24 9.5
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 28.3 bits (60), Expect = 0.58
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 190 ASKPRQFTGWHFPKQTRILHWNL 122
A + R++ GWHFP+ +I+ NL
Sbjct: 181 AMRVREWYGWHFPEMGKIIQDNL 203
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 27.5 bits (58), Expect = 1.0
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = -2
Query: 188 IQTATVHRLAFSETNTNIALESNVVATRELESIKGG----SQSTAIFTSFPLAE 39
IQT T R +F+E + +++V T SI GG +S+ +F SF + E
Sbjct: 729 IQTLTAPRQSFNEDLLSANTKNSVYKTSANRSISGGIRLLRKSSEVFYSFSILE 782
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 3.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 149 FRKMPTGELSRFGCFWKAKETRSNRQRNSVIDIGRTTPRGGNRRIESDIND 301
F MP+G+ + WK+ + +R V D + GGN RI + IN+
Sbjct: 106 FYYMPSGDEEKLPSSWKSFLLENEYRRMGVGDSTQADGAGGNWRI-TKINE 155
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = -2
Query: 212 SFLSLSKSIQTATVHRLAFSETNTNIALESNVVATRELESIKGGSQSTAIFTSFPLA 42
S++ K +Q+ V+R+ ++LE+NV++TR+ + I + +A+ P++
Sbjct: 336 SWIPYPKELQSLQVNRIP------ELSLENNVMSTRDYKDIMPHPRPSAVLLDKPVS 386
>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 178
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 87 RRLSKHCHLHFVPTRRI*QCPLHNRP 10
RRLS + H+ P R+ P H+RP
Sbjct: 4 RRLSTNVHIDLQPIRQGILLPFHDRP 29
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 210 REAIDNEIPSSISEGQLREEVTVVSNPILTMQRRDTSQVARQRDGGSEA 356
REA DN++ S G + ++ NP Q +T+ + G +A
Sbjct: 189 REANDNDVNRRNSRGSSQGSISSFRNPDSRKQYEETTSASLSAPGAFDA 237
>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 141
Score = 24.6 bits (51), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 84 RLSKHCHLHFVPTRRI*QCPLHN 16
RL KH HL+F+P + L N
Sbjct: 83 RLGKHVHLNFLPFENTFEMALRN 105
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 7.2
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = -2
Query: 233 NFVVDCFSFLSLSKSIQTATVHRLAFSETNTNIALESNVVATRELESIKGGS-----QST 69
+F + SFLS++KSI+ + L + SN AT EL+ S Q
Sbjct: 10 SFAILRISFLSITKSIKFCKLRALQVANPQRKAKTPSN-HATEELQQSSTNSTTLPTQEA 68
Query: 68 AIFTSFPLAEYSSVRCTTVRP 6
A+ T+ + +S T P
Sbjct: 69 AVETNASASHETSFALPTTSP 89
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 24.6 bits (51), Expect = 7.2
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 266 LAELSFRYR*RNFV-VDCFSFLSLSKSIQTATVHRLAFSETNTNIA 132
+AELS R R VD + +SLSK+ + ++ L + NT+IA
Sbjct: 593 MAELSSSMRRRQSTSVDDEAPVSLSKTSSSTRLNGLGYHSRNTSIA 638
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 24.2 bits (50), Expect = 9.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 375 GGEVCVSAAGSRGRSSTH 428
GG+VCVSAA G++ ++
Sbjct: 173 GGDVCVSAATGSGKTLSY 190
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 24.2 bits (50), Expect = 9.5
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = +3
Query: 204 KKREAIDNEIPSSISEGQLREEVTVVSNPILTMQRRDTSQVARQRDGGSEATGGQ 368
K+ AI++E S+SE + E + +PI++ ++ ++ +++ + G+
Sbjct: 60 KENNAINSEAEKSVSEEEQDEPLVEGESPIVSTNKKAKNKKKKKKQQKKKKVTGK 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,024
Number of Sequences: 5004
Number of extensions: 30430
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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