Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I07
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.1  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   2.7  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   2.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 205 RNEKQSTTKFRHRYRKD 255
           RN K+ + +FR R RK+
Sbjct: 481 RNNKEDSEEFRQRLRKE 497


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 343 VAPRPQVVKPLAEKCVCQ 396
           V P+P  +K  A  CVC+
Sbjct: 57  VVPKPLCIKICAPGCVCR 74


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 343 VAPRPQVVKPLAEKCVCQ 396
           V P+P  +K  A  CVC+
Sbjct: 57  VVPKPLCIKICAPGCVCR 74


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 357 WPRSHRHAAGLLATYHDAASLISDSI-RRLPP 265
           +  S RH    +A  +DA+S  SDS+   +PP
Sbjct: 28  YKHSRRHRDFTVAESYDASSSNSDSLSMTIPP 59


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 359 CGLGATVTLPGYL 321
           CGL + + +PGY+
Sbjct: 535 CGLSSMLCIPGYM 547


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 359 CGLGATVTLPGYL 321
           CGL + + +PGY+
Sbjct: 588 CGLSSMLCIPGYM 600


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,560
Number of Sequences: 438
Number of extensions: 2052
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)