Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_I05
(536 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 41 1e-04
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 38 7e-04
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 1.3
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 2.3
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 26 3.1
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans... 26 4.1
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 25 5.4
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 9.5
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa... 25 9.5
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 25 9.5
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 40.7 bits (91), Expect = 1e-04
Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Frame = +3
Query: 90 DFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGS-----LEKA-----I 239
D LR+ + +D +IG G +R + ++ RV R+D+ + L K +
Sbjct: 796 DTILRVNIPNDFHRQLIGSNGKYVRRLEEKFSVRVRFPREDDSSNSTGNELMKPTSPDEV 855
Query: 240 TIYGNPENCTNACKRILEVMQQEANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQE 419
I G ++ A + +LE+ + E + I + A + R++G+ G+T++ I +
Sbjct: 856 VIRGGKKSVAAAKQELLELYEYEKSIAYTSTIDIPSKA----VSRVVGRNGSTVENIRTQ 911
Query: 420 TDTKITVSSINDINSFNLERIITVKGSIENMAKAESQIS 536
D KI + ++ + + + K +EN K S I+
Sbjct: 912 FDVKIDIGDVSTEETTPVS-VRGAKADVENAIKEISAIA 949
Score = 36.3 bits (80), Expect = 0.003
Identities = 30/116 (25%), Positives = 52/116 (44%)
Frame = +3
Query: 186 ARVDVHRKDNVGSLEKAITIYGNPENCTNACKRILEVMQQEANNTNKGEICLKILAHNNL 365
AR+ N ++ + G+ E R+LE++++ N + KI
Sbjct: 995 ARLISFSNGNSEEERNSVVLRGDKEIVEALETRLLEIVEELKNQVEE-----KIEVPQRC 1049
Query: 366 IGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKAESQI 533
I IIG+ G+T + I ++T T + + ++ D IT+ GS EN KA+ I
Sbjct: 1050 ISSIIGRMGSTRRDIERKTSTMLNIPNVLDPEE---TVTITIVGSPENCEKAKEMI 1102
Score = 35.9 bits (79), Expect = 0.004
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 102 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKA--ITIYGNPENCTNA 275
++ V + +IIGR GST R I +++ +++ NV E+ ITI G+PENC A
Sbjct: 1042 KIEVPQRCISSIIGRMGSTRRDIERKTSTMLNI---PNVLDPEETVTITIVGSPENCEKA 1098
Query: 276 CKRILE 293
+ I E
Sbjct: 1099 KEMIQE 1104
Score = 33.9 bits (74), Expect = 0.015
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = +3
Query: 210 DNVGSLEKAITIYGNPENCTNACKRILEVMQQEANNTNKGEICLKILA-HNNLIGRIIGK 386
D GS + G+ EN A + + ++Q N C+ L NL RIIG
Sbjct: 1172 DYTGSSSSEWAVRGHKENVEKAIASLEKSIKQVMEN------CIAYLGIPTNLHRRIIGS 1225
Query: 387 GGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKAESQI 533
GG+ I +I + KI D+ + I+ V+GS + KA+ I
Sbjct: 1226 GGSIINKIRKIAQVKI------DVPRTPGDEIVVVQGSRAGVVKAKDLI 1268
Score = 29.1 bits (62), Expect = 0.44
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +3
Query: 123 MVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPENCTNACKRILEVMQ 302
+VGAIIG G ++ I ++ R+ + +++N + ++ PE N+ L+ ++
Sbjct: 235 VVGAIIGTNGQNLKSIMDRTSTRIQIPKRNNTAN--ESSDDAKKPEKEENSAASTLDDLE 292
Query: 303 QEANNTN---KGEICLKILAHNNLIGRIIGKGGNTIKRI 410
+ T +G+ LA ++ I + NT RI
Sbjct: 293 PQYEMTTITIEGDFEGVELAQKDIEAIINERTSNTTVRI 331
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 135 IIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPENCTNACKRILEVMQQEAN 314
IIG GS I I + ++ ++DV R ++ + + G+ A I E +Q+ N
Sbjct: 1222 IIGSGGSIINKIRKIAQVKIDVPRTPG----DEIVVVQGSRAGVVKAKDLIFERLQENQN 1277
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 38.3 bits (85), Expect = 7e-04
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 99 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPEN 263
LRLL+ ++G+IIGR G I+LI + R+ + S E+ + I+G +N
Sbjct: 181 LRLLIAHSLMGSIIGRNGLRIKLIQDKCSCRMIASKDMLPQSTERTVEIHGTVDN 235
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +3
Query: 111 VQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPENCTNACKRIL 290
+ +DMVG IIGR GS I I + S +++ + ++ + + E+ TI G E A +
Sbjct: 327 IPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITGTHEENEKALFLLY 386
Query: 291 EVMQQE 308
+ ++ E
Sbjct: 387 QQLEME 392
Score = 33.1 bits (72), Expect = 0.027
Identities = 17/54 (31%), Positives = 33/54 (61%)
Frame = +3
Query: 360 NLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKA 521
+++G IIG+GG+ I I + + +KI+++ + + ER+ T+ G+ E KA
Sbjct: 330 DMVGCIIGRGGSKISEIRRTSGSKISIA--KEPHDETGERMFTITGTHEENEKA 381
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +3
Query: 300 QQEANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLER 479
++ A K + +K N IG +IG G+T+K + ++ KI + +
Sbjct: 181 RRPAKTQEKVYVPVKDYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGKGRS 240
Query: 480 IITVKGSIE 506
+V+G++E
Sbjct: 241 DPSVRGNME 249
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 408 IMQETDTKITVSSINDINSFNLERI 482
++Q TDT TV ++N+I +LER+
Sbjct: 831 LVQLTDTPFTVITLNEIEIAHLERV 855
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 132 AIIGRQGSTIRLITQQSRARVDV 200
AI+G QG+ ++ I Q++R RV +
Sbjct: 308 AIVGPQGAYVKHIQQETRTRVQI 330
>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
transporter Hut1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 355 WAKIFKQISPLLVLLASCCMTSSILLHAFVQFSGFP 248
+A +F P ++L SC + I LH FV FP
Sbjct: 95 YASMFHLSYPTVILGKSCKLLPVIALHVFVYKRKFP 130
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 175 NKAVRESMYTVKITWGHW 228
N ++SM+TVK W W
Sbjct: 356 NSKYKDSMFTVKTNWNMW 373
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 201 HRKDNVGSLE-KAITIYGNPENCTNACKRILEVM 299
+R + +G L K+ + +P N TN +RIL+ M
Sbjct: 1367 NRVNTIGGLNPKSYRLITSPSNLTNPTRRILDGM 1400
>SPBC337.15c |coq7||ubiquinone biosynthesis protein
Coq7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 9.5
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -1
Query: 410 DSLYSVSTLTNDSANQIIVGQNFQADFTFISVVGLLLHDF---KYSLA 276
DS+ V ANQI GQ+F FT V + H + KY LA
Sbjct: 44 DSVIRVDQAGELGANQIYKGQHFILQFTDPKVAPTIQHMWDQEKYHLA 91
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/58 (22%), Positives = 25/58 (43%)
Frame = +3
Query: 276 CKRILEVMQQEANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSI 449
CK+ V+ + + K + + N++ IG G N + I QE D + + +
Sbjct: 999 CKQCKTVLCCRVSPSQKAAVVALVKKSLNVVTLAIGDGANDVSMI-QEADVGVGIKGV 1055
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 366 IGRIIGKGGNTIKRIMQETDTKITV--SSINDINSFNLERI 482
IGRI G+GG T I + T+I + S I+ + F RI
Sbjct: 186 IGRIAGQGGKTKFAIENASRTRIVLADSKIHILGGFTNIRI 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,867
Number of Sequences: 5004
Number of extensions: 39962
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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