Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_I01
         (442 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.5  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   3.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   4.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 288 NNVIV*MSYRAVCKSFRMLSCRTVEFVVSRVVPQ 389
           NN  + M  R  C+  R+  C TV      VVP+
Sbjct: 227 NNCEIDMYMRRKCQECRLKKCLTVGMRPECVVPE 260


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 288 NNVIV*MSYRAVCKSFRMLSCRTVEFVVSRVVPQ 389
           NN  + M  R  C+  R+  C TV      +VP+
Sbjct: 24  NNCEIDMYMRRKCQECRLKKCLTVGMRPECMVPE 57


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 313 IVQFVSHLGCYRAEQSNSSFLELCLRICT 399
           I  + S+L C +     S+  E+CL  CT
Sbjct: 141 IDSYKSNLKCDKCSTYQSNGEEVCLENCT 169


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 152 LSFAPVIATVSRHAIFH 102
           LSFA + AT+ + A+ H
Sbjct: 282 LSFAFIFATIIQFAVVH 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,430
Number of Sequences: 438
Number of extensions: 1757
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)