Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H23
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0918 - 21560635-21560795,21560847-21560935,21561696-215617...    31   0.90 
05_04_0228 - 19224901-19224991,19225095-19225219,19225293-192254...    28   8.4  

>10_08_0918 -
           21560635-21560795,21560847-21560935,21561696-21561760,
           21561841-21561892,21562271-21562356,21562457-21562626,
           21562748-21562831,21563284-21563354,21563461-21563621
          Length = 312

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 16/55 (29%), Positives = 33/55 (60%)
 Frame = +3

Query: 123 VINMNGFYSILWLIQINLVYMTLVI*SKIINILLCRGHNKQISLRPALTCVYTDI 287
           ++NM   ++ +W +Q +     L+I +  ++IL  R +   +SL  A++C++TDI
Sbjct: 238 LLNMTTLWTSIWAVQAD----DLLIEATYMSILHIRDYMSLLSLDHAISCLHTDI 288


>05_04_0228 -
           19224901-19224991,19225095-19225219,19225293-19225410,
           19225554-19225618,19225760-19225839,19225942-19226005,
           19227341-19227480,19227571-19227694,19227781-19227840,
           19227922-19227990,19228139-19228288,19229182-19229289,
           19229573-19229648,19229960-19230054,19231729-19231803,
           19231923-19232043,19232136-19232308,19232647-19232813,
           19232944-19233301
          Length = 752

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 530 LAKYTVA*KANV-YISKLFEFKYGFTRMSYILHCVLFLL 643
           L +YT+A   NV  +S +++    F  MS    CVLF+L
Sbjct: 674 LCEYTIAQDVNVDNVSDMYDLSEAFHAMSLRHTCVLFIL 712


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,963,712
Number of Sequences: 37544
Number of extensions: 258574
Number of successful extensions: 389
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)