Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H23
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.0  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    22   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -1

Query: 317 LCYLFISLINDICIN 273
           +C+++ SL+  +C+N
Sbjct: 371 MCFIYASLLEFVCVN 385


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -1

Query: 317 LCYLFISLINDICIN 273
           +C+++ SL+  +C+N
Sbjct: 340 MCFIYASLLEFVCVN 354


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -1

Query: 317 LCYLFISLINDICIN 273
           +C+++ SL+  +C+N
Sbjct: 391 MCFIYASLLEFVCVN 405


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -1

Query: 317 LCYLFISLINDICIN 273
           +C+++ SL+  +C+N
Sbjct: 340 MCFIYASLLEFVCVN 354


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 581 FEFKYGFTRMSYILHCVLFLLYGTY 655
           F ++YGF+ + Y+   +   + GTY
Sbjct: 223 FTYRYGFSFLLYVSGFITTEVAGTY 247


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 702 IIIIY*LCASGCARVSYVP 646
           +I I+ L A+ CA  +YVP
Sbjct: 4   VIFIFALLATICAAFAYVP 22


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +3

Query: 636  FFYTEHMKRGRSRWHTAS 689
            +F  EH K+ +  W+  S
Sbjct: 1493 YFVVEHKKKNQQEWNQVS 1510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,862
Number of Sequences: 438
Number of extensions: 3833
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)