Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_H22
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 41 2e-04
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 28 1.0
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 27 3.1
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 4.1
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 25 9.4
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 25 9.4
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 25 9.4
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 25 9.4
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 25 9.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 9.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +3
Query: 3 TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 101
T FT N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 471 TYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -2
Query: 533 NVNSMKYLHDTTLIF*RIISKSSINTLVYLN----NLQQITVNKISQYEHNIHTNLCKFQ 366
N+ +YL T + ++K S NT+ LN N++++ N++++ I + + Q
Sbjct: 820 NIELQRYLQQLTQYSEKFLNKESENTVGLLNAPGENIEELVDNQLAETAQAIQQAILRLQ 879
Query: 365 N 363
N
Sbjct: 880 N 880
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 9 FTPSNSRQAKDLVSVLQEANQIISPQLQSMA 101
F +N AK+L+ +LQEANQ L +MA
Sbjct: 534 FNRNNKGIAKELIELLQEANQECPSFLIAMA 564
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 4.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 116 WRRWMEQKQIWRRT 157
WRRW+E + WR++
Sbjct: 1120 WRRWLESDEGWRKS 1133
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 461 NTLVYLNNLQQITVNKISQYEHNIHTNLCKFQNNH 357
NT+ + I NKI ++ +++ T KF N++
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSY 93
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 461 NTLVYLNNLQQITVNKISQYEHNIHTNLCKFQNNH 357
NT+ + I NKI ++ +++ T KF N++
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSY 93
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 461 NTLVYLNNLQQITVNKISQYEHNIHTNLCKFQNNH 357
NT+ + I NKI ++ +++ T KF N++
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSY 93
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 461 NTLVYLNNLQQITVNKISQYEHNIHTNLCKFQNNH 357
NT+ + I NKI ++ +++ T KF N++
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSY 93
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 461 NTLVYLNNLQQITVNKISQYEHNIHTNLCKFQNNH 357
NT+ + I NKI ++ +++ T KF N++
Sbjct: 59 NTIKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSY 93
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 306 TQVLIRGLLLTVKIHTIKFKLDINSHQIF 220
T L GL LT+ I+T+K + + + +F
Sbjct: 1254 TSFLESGLALTIPINTVKIRYENGTEDVF 1282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,222
Number of Sequences: 5004
Number of extensions: 37964
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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