Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H22
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    33   0.20 
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371...    33   0.26 
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524...    31   0.60 
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591...    29   3.2  
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204...    28   7.4  
06_03_0806 + 24788441-24789049                                         27   9.7  

>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
            27125387-27125656,27126027-27126377,27126480-27126757,
            27126887-27128330
          Length = 1398

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 3    TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 101
            T F+  + + A DLV VL+ ANQ + P+LQ MA
Sbjct: 950  TFFSEQDWKYAGDLVKVLEGANQHVPPELQEMA 982


>01_01_0509 -
           3713109-3713244,3713689-3713733,3713959-3714015,
           3714088-3714438,3714585-3714862,3714939-3715289,
           3715378-3715647,3716035-3716103,3716194-3716304,
           3716503-3716583,3716825-3716914,3717032-3717262
          Length = 689

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSM 98
           T F   +S+ A DLV +L+ ANQ +S QL+ M
Sbjct: 526 TFFCDQDSKYASDLVKILEGANQSVSQQLRDM 557


>01_01_0682 -
           5244805-5244919,5246468-5246613,5246813-5246994,
           5247069-5247295,5247382-5247467,5247564-5247656,
           5247964-5248118,5248407-5248490,5248589-5248768,
           5249587-5249828,5249927-5249982
          Length = 521

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQ 71
           T FT +N+R AKDL+++L+EA Q
Sbjct: 412 TFFTAANARFAKDLINILEEAGQ 434


>04_04_1445 -
           33658355-33658417,33658536-33658669,33659056-33659116,
           33659197-33659356,33660032-33660081,33662237-33662290,
           33662630-33662704,33662821-33662949,33663065-33663152,
           33663266-33663372,33663513-33663561,33663657-33663760,
           33663941-33663980,33664409-33664659,33664674-33664686,
           33665846-33666355,33666437-33667657,33667973-33668221,
           33668305-33668531
          Length = 1194

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -2

Query: 527 NSMKYLHDTTLIF*RIISKSSINTLVYLNNLQQITVNKISQYEHNIHTNLCKFQNNHQII 348
           N   YL   TL+F  +++   ++TL   +NLQQ  V K+    H I  N+ K  ++   I
Sbjct: 187 NKSFYLMVDTLVF--MVNSCQVDTL---HNLQQDVVRKVLPLLHKIWKNVDKLGSSTDCI 241

Query: 347 N 345
           N
Sbjct: 242 N 242


>01_05_0292 +
           20518668-20519090,20519213-20519281,20520204-20520473,
           20520734-20521084,20521251-20521528,20522755-20523099,
           20523346-20523911,20525155-20525528
          Length = 891

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 101
           T F   +S+ A DL+ +L+ ANQ +   L  MA
Sbjct: 496 TFFCDQDSKYAADLIKILEGANQRVPRDLADMA 528


>06_03_0806 + 24788441-24789049
          Length = 202

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 339 SLIYYLMIVLKFTQISVYIMFIL*YFVYCDLL 434
           S+IYYL I L    +S+Y++ I+   +Y  ++
Sbjct: 170 SIIYYLSIYLLSIYLSIYLLSIIYLSIYLSII 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,263,240
Number of Sequences: 37544
Number of extensions: 209725
Number of successful extensions: 479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)