Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H22
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   2.1  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   2.7  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   8.3  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    23   8.3  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 558 NLSRFYMKKCELDEIFTRYYTDILKDY*QVLDKYL 454
           NL+R Y      D+   + Y DILK++   +D YL
Sbjct: 501 NLARLYEAMAVFDKA-DKLYKDILKEHPNYIDCYL 534


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 428 ITVNKISQYEHNIHTNL 378
           I + KI QYE N HT +
Sbjct: 657 IALEKIQQYERNCHTQI 673


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +1

Query: 517  FIEFTFLHVKP*KIVHSTFLLH*IDLPKV--HLRH 615
            F+EF      P  IV   F++H I  P +  H RH
Sbjct: 2886 FLEFVVTQRTPLYIVLMPFIMHKISQPPIGDHERH 2920


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 5/20 (25%), Positives = 11/20 (55%)
 Frame = +2

Query: 113 RWRRWMEQKQIWRRTWRWWI 172
           +W  W +Q++ +     WW+
Sbjct: 266 KWNNWTKQRRNYGTWISWWV 285


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,006
Number of Sequences: 2352
Number of extensions: 9058
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)