Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H22
         (648 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z97056-3|CAB09792.1|  650|Homo sapiens DEAD (Asp-Glu-Ala-Asp) bo...    44   4e-04
U59321-1|AAC50787.1|  650|Homo sapiens DEAD-box protein p72 prot...    44   4e-04
CR456432-1|CAG30318.1|  652|Homo sapiens DDX17 protein.                44   4e-04
BC000595-1|AAH00595.2|  729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    44   4e-04
AB209595-1|BAD92832.1|  737|Homo sapiens DEAD box polypeptide 17...    44   4e-04
X52104-1|CAA36324.1|  614|Homo sapiens protein ( Human mRNA for ...    43   0.001
X15729-1|CAA33751.1|  614|Homo sapiens protein ( Human mRNA for ...    43   0.001
BT006943-1|AAP35589.1|  614|Homo sapiens DEAD/H (Asp-Glu-Ala-Asp...    43   0.001
BC016027-1|AAH16027.1|  614|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    43   0.001
AF015812-1|AAB84094.1|  614|Homo sapiens RNA helicase p68 protein.     43   0.001
BC066938-1|AAH66938.1|  648|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ...    30   6.2  
AJ278110-1|CAB92442.1|  648|Homo sapiens DEAD-box protein protein.     30   6.2  

>Z97056-3|CAB09792.1|  650|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 17 protein.
          Length = 650

 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 104
           T FTP N +QA++L+ VL+EANQ I+P+L  + D
Sbjct: 441 TFFTPGNLKQARELIKVLEEANQAINPKLMQLVD 474


>U59321-1|AAC50787.1|  650|Homo sapiens DEAD-box protein p72
           protein.
          Length = 650

 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 104
           T FTP N +QA++L+ VL+EANQ I+P+L  + D
Sbjct: 441 TFFTPGNLKQARELIKVLEEANQAINPKLMQLVD 474


>CR456432-1|CAG30318.1|  652|Homo sapiens DDX17 protein.
          Length = 652

 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 104
           T FTP N +QA++L+ VL+EANQ I+P+L  + D
Sbjct: 441 TFFTPGNLKQARELIKVLEEANQAINPKLMQLVD 474


>BC000595-1|AAH00595.2|  729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 17 protein.
          Length = 729

 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 104
           T FTP N +QA++L+ VL+EANQ I+P+L  + D
Sbjct: 520 TFFTPGNLKQARELIKVLEEANQAINPKLMQLVD 553


>AB209595-1|BAD92832.1|  737|Homo sapiens DEAD box polypeptide 17
           isoform p82 variant protein.
          Length = 737

 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 104
           T FTP N +QA++L+ VL+EANQ I+P+L  + D
Sbjct: 522 TFFTPGNLKQARELIKVLEEANQAINPKLMQLVD 555


>X52104-1|CAA36324.1|  614|Homo sapiens protein ( Human mRNA for p68
           protein. ).
          Length = 614

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 104
           T FTP+N +Q  DL+SVL+EANQ I+P+L  + +
Sbjct: 443 TFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476


>X15729-1|CAA33751.1|  614|Homo sapiens protein ( Human mRNA for
           nuclear p68 protein. ).
          Length = 614

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 104
           T FTP+N +Q  DL+SVL+EANQ I+P+L  + +
Sbjct: 443 TFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476


>BT006943-1|AAP35589.1|  614|Homo sapiens DEAD/H
           (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase,
           68kDa) protein.
          Length = 614

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 104
           T FTP+N +Q  DL+SVL+EANQ I+P+L  + +
Sbjct: 443 TFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476


>BC016027-1|AAH16027.1|  614|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 5 protein.
          Length = 614

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 104
           T FTP+N +Q  DL+SVL+EANQ I+P+L  + +
Sbjct: 443 TFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476


>AF015812-1|AAB84094.1|  614|Homo sapiens RNA helicase p68 protein.
          Length = 614

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 104
           T FTP+N +Q  DL+SVL+EANQ I+P+L  + +
Sbjct: 443 TFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476


>BC066938-1|AAH66938.1|  648|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 protein.
          Length = 648

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 104
           T  T ++ R A +L+++L+ ANQ I  +L SMA+
Sbjct: 589 TTLTRNDWRVASELINILERANQSIPEELVSMAE 622


>AJ278110-1|CAB92442.1|  648|Homo sapiens DEAD-box protein protein.
          Length = 648

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 3   TGFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 104
           T  T ++ R A +L+++L+ ANQ I  +L SMA+
Sbjct: 589 TTLTRNDWRVASELINILERANQSIPEELVSMAE 622


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,626,801
Number of Sequences: 237096
Number of extensions: 1236123
Number of successful extensions: 1850
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1850
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)