Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_H20
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   109   2e-25
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    29   0.26 
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   0.78 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    28   0.78 
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.1  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   5.5  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         24   9.6  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  109 bits (262), Expect = 2e-25
 Identities = 52/117 (44%), Positives = 71/117 (60%)
 Frame = -2

Query: 417 GVTVT*THHALIENNYSQATQSLFITITLGIYFTILQAYEYLEAPFTIADSIYGSTFFMA 238
           G ++T  H++LI  N   A + L++TI L   F   QAYEY  APFTI+DS+YG++F+ A
Sbjct: 153 GASLTYAHYSLIARNRENALKGLYMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFA 212

Query: 237 TGFHGLHVIIGTLFLLICFLRXXXXXXXXXXXXXFEAAA*Y*HFVDVV*LFLYISIY 67
           TG HG+H+I+GT+ LL+                 FE    Y HF DVV LFLY++IY
Sbjct: 213 TGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYYWHFCDVVWLFLYLTIY 269


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 262 LWINFFYGYWISWPSCNYW 206
           LW+N  +  W+SW SCN++
Sbjct: 335 LWLNEGFATWMSWFSCNHF 353


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 27.9 bits (59), Expect = 0.78
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = -2

Query: 333 LGIYFTILQAYEYLE----APFTIADSIYGSTFFMATGFHGLHVI------IGTLFLLIC 184
           L IYF+ L +YE +E       T+ DS+YG   +     H L  I         L LLIC
Sbjct: 131 LTIYFSTLLSYEKVENLIKKSLTVIDSLYGLLNYQINAQHSLGCIPLNQDSFKQLKLLIC 190

Query: 183 FL 178
            L
Sbjct: 191 IL 192


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.9 bits (59), Expect = 0.78
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = +3

Query: 75  KYKEIIILHLQSVNIMQ---LLQIQSDDYL--RNDLSYDVKSKLIKIMFQ*LHEGHE 230
           KY+EII+ H Q    MQ   LL+I S D L  +  LSY   +++  +++   ++ +E
Sbjct: 238 KYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQSLVYPIAYKTNE 294


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 14/53 (26%), Positives = 32/53 (60%)
 Frame = +3

Query: 78  YKEIIILHLQSVNIMQLLQIQSDDYLRNDLSYDVKSKLIKIMFQ*LHEGHEIQ 236
           Y  I ILH QS++ ++ +++ SD++L   + +D +  L  I F  + + ++++
Sbjct: 304 YMLIKILHFQSISKIEHIELISDNFLL--IQHDSQLSLWDITFGTIQDVYDLK 354


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = -2

Query: 384 IENNYSQATQSLFITITLGIYFTILQAYEYLEAPFTIADSI 262
           +  +YS  +  L++ +  G+Y + L++Y+    P   A  +
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYKPKAVPSETAAEV 48


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 297 YLEAPFTIADSIYGSTFF 244
           YL+ PFT+  S++   FF
Sbjct: 124 YLQGPFTLCVSVWNDQFF 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,382,833
Number of Sequences: 5004
Number of extensions: 21692
Number of successful extensions: 61
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)